Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5053 ATGGGTGACTACTTTGGAAAGAAAATGGATTGTGACATAGACCTAAACCTTCCATTGAAAGAGGTGAAGTTTAAGTGGTATCCTGAAAACTACTCGAGACAGAACAATACTACTACTCCATTGGTTTCTCAAAATGGCACTCAAGATATGATGAACATAAGTGATGCAAACAAACAAGTCCATCCAGTTGCTGCTGCTGCTGCTGCTGCAGATGTTCCAACTTTGGTTGCAGAACAAGGCTCTGCCAACCACGGAGTCCCAACTGACCCCGGCCGCCGTCGCTACCGTCGTCACGGACAACCTCTTCCAGCTCGTCCAACTGATCCACTAAGATTCTGCACAAATCTTCACTGTATGGCAAGAAAAACTCCCATGTGGCGCTCTGGACCTATTGGATCAAGGACTTTGTGCAATGCTTGTGGAATTTACTACAACAAATATGTGATACGTGGAAAGGTTCATGCAATTATAATCCATGAAGATGGTTGTTCATCTGCTTTTGTTCCACCAACTCAATCTGTGGAAAGAGACTCTTCAACTTCCTAA 546 0.4414 MGDYFGKKMDCDIDLNLPLKEVKFKWYPENYSRQNNTTTPLVSQNGTQDMMNISDANKQVHPVAAAAAAADVPTLVAEQGSANHGVPTDPGRRRYRRHGQPLPARPTDPLRFCTNLHCMARKTPMWRSGPIGSRTLCNACGIYYNKYVIRGKVHAIIIHEDGCSSAFVPPTQSVERDSSTS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5053 181 SMART GATA_3 107 163 IPR000679 GO:0006355|GO:0043565
Psa1g5053 181 ProSiteProfiles GATA-type zinc finger domain profile. 117 144 IPR000679 GO:0006355|GO:0043565
Psa1g5053 181 CDD ZnF_GATA 117 147 IPR000679 GO:0006355|GO:0043565
Psa1g5053 181 PANTHER GATA TRANSCRIPTION FACTOR 30 173 - -
Psa1g5053 181 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 108 150 - -
Psa1g5053 181 Pfam GATA zinc finger 113 147 IPR000679 GO:0006355|GO:0043565
Psa1g5053 181 Gene3D - 110 178 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5053 Psa-Chr1 369207741 369214851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5053 110 161 C2C2-Gata Transcription Factor Family AT3G20750 47.170 1.10e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa1g5053 GATA 5.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5053 - - gmx:102663335 83.1889