Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5048 ATGAAGATTGTTGTTGTGTTTCCTTTCTTTCTATGTATCAACATGATGATGAGTTTGATGAGTATTTCAGCAGCTCCTACTCCTTCTCCATCATCATCATCATCATCATGTCCTATGGATCTTAACTATGTCCTAAGAATCCATTGGAACTCTTCAGCTTGTCAAAATCTAGAGCCTTTATCATCAAAACAAGTTTCAAACACAAGCAATTGTTGCATATCACTTTTGTCTCTCTTTGGAATAGGATTTGCGCAACATCTAAAAGAAACCTCACAGTTCAATCTCCAAGACCTTCAAACTTCAATTTCATGCATGAAAGATTTTCAATCAAAGCTCAATTCTTTATCACTTTCGAAAAACCTTGTCAACTCTTGTTTTGACCCTCTTCAATTTGTTATCTCTCCTAACATATGTGCAGGTATTGAAACTGTTCATGATTGGAATGAGAAGTTGGGTCAGAACACCAATCTCAACTCTGCTTGTAAACCAGATCTAACTGATCTTTCTCAGTGTGATGTCTGTTTAGCTGCTGGTTTACAGGTTAAGCAGAAGCTTGTTTCGATTGATGGTAATTCTTCTCATTCGTTGAGTTGTTTTTACTTTGCAATTCTTTATGCTGCTGGAATTGTGAATGAGTTTGGACCTGAAAGTAATGGTGCTGTTACATGTGCTTTTAGTTTACCTGTTTATACACAAACTGGTTCTGGTTCGAAGAATCATCAGGGTCTTGTGTTCGGGTTAACCGGAGCTGGTGTTGCGTTGTTTGTTATGAGTTCTTTGTTGGGTTTATATGTTTGGTATGATAGGAAACGTATGAGGAAGAGAAAGCTTGAAACTTTTCAATTTGATTTTGATCCCGAGGAACAAGGCTCTCGCCGTAGGTTGAGACCGAATACCGGGTCGATTTGGTACAAAATTCCGGAACTTGAGAAAGCAACTGATAATTTTTCATCCAAGAATTTCATAGGGAGAGGTGGGTTTGGTTTGGTTTTCAAAGGAACTTTGGCTGATGGATCTGTTGTTGCGGTTAAGCGGGTTTTAGAATCCGATTTTCAAGGGGATGTCGAGTTTTGTAATGAAGTCGAGATTATTAGTAATCTTAAGCATAGGAATTTGTTGCCTCTTAGAGGTTGTTGTGTGGTTGATGAGAGTGAGAATTATGGTGATAGAGGAAGTCAAAGATATCTTGTTTACGATTACATGCCGAATGGAAACCTCGAAGATCATCTTTTTGTGTCGAAGGATCCTTCGAAACCGAACAAATTGTTGACTTGGCCTCTAAGGAAAAACATAATCTTGGATGTAGCGAAAGGTTTGGCTTATTTGCACTACGGAGTCAAGCCTGCAATCTATCATAGGGATATCAAAGCTACTAATATTCTACTTGATGAAGATATGAGGGCAAGAGTTGCCGATTTCGGACTTGCGAAGCAAAGCAGGGAGGGTCAGTCTCATCTCACTACTAGGGTGGCGGGGACTCATGGATACCTTGCGCCGGAATACGCGCTTTATGGTCAACTGACGGAGAAGAGTGATGTGTATAGCTTTGGCGTGGTTGTTTTGGAGATAATGTGCGGGAGGAAGGCTCTTGATTTGTCTTCGTCAGGATCGCCGCGGGCGTTCTTGATTACAGATTGGGCTTGGTCGTTGGTGAAATCGGGGAAAATAGACGAGGCTTTGGATGCTTCTCTTTTGAAAGACGAAAACAATACTAGTTCGAATCCAAAGAGCATAATGGAAAGGTTTTTGCTGGTTGGAATTCTGTGTTCTCATGTAATGGTCGCTTTGAGACCGACTATTTCAGATGCTTTGAAGATGTTGGAAGGCGATATCGAAGTTCCTCAAATTCCAGACAGGCCTATGCCTCTTGGACATCCTTCATTTTATAATAACGACTGCAACGGCAACACTTTTAGCATTTCTCCGGCGTTAAGCGGCCTCAAATTGCCCACGGGAGACATGCTCAGGTCAATTAGTGAGAGATGA 1986 0.4089 MKIVVVFPFFLCINMMMSLMSISAAPTPSPSSSSSSCPMDLNYVLRIHWNSSACQNLEPLSSKQVSNTSNCCISLLSLFGIGFAQHLKETSQFNLQDLQTSISCMKDFQSKLNSLSLSKNLVNSCFDPLQFVISPNICAGIETVHDWNEKLGQNTNLNSACKPDLTDLSQCDVCLAAGLQVKQKLVSIDGNSSHSLSCFYFAILYAAGIVNEFGPESNGAVTCAFSLPVYTQTGSGSKNHQGLVFGLTGAGVALFVMSSLLGLYVWYDRKRMRKRKLETFQFDFDPEEQGSRRRLRPNTGSIWYKIPELEKATDNFSSKNFIGRGGFGLVFKGTLADGSVVAVKRVLESDFQGDVEFCNEVEIISNLKHRNLLPLRGCCVVDESENYGDRGSQRYLVYDYMPNGNLEDHLFVSKDPSKPNKLLTWPLRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGKIDEALDASLLKDENNTSSNPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPQIPDRPMPLGHPSFYNNDCNGNTFSISPALSGLKLPTGDMLRSISER* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5048 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Psa1g5048 661 Pfam Protein kinase domain 318 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5048 661 SUPERFAMILY Protein kinase-like (PK-like) 297 608 IPR011009 -
Psa1g5048 661 CDD STKc_IRAK 322 609 - -
Psa1g5048 661 Gene3D Transferase(Phosphotransferase) domain 1 401 615 - -
Psa1g5048 661 Pfam SPARK 32 199 IPR043891 -
Psa1g5048 661 ProSiteProfiles Protein kinase domain profile. 316 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5048 661 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Psa1g5048 661 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 29 655 - -
Psa1g5048 661 Gene3D Phosphorylase Kinase; domain 1 287 400 - -
Psa1g5048 661 SMART serkin_6 316 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g5048 661 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5048 Psa-Chr1 368978042 368981461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5048 32 656 Receptor kinase-like Gene Family AT1G11050 64.217 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Psa1g5048 Pkinase 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5048 - - gmx:100806560 1046.19