Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5041 ATGGATGAGGGAAAACATAAATTGAGAAAAGAAGAAGGTGATTCTAAGAGGAGTCATCGTGATCGAGATCGCGATAGAACTGGTGAAAGAGGTAAGGAAAAGGATAGAAGTGATGGTAGACATAAGGATAATAGGGAGAAGAGGGATCGTGAATCTCGTAGACATGATAGAGAGAAAAGTACTGATTCTGATGATAAGCATGATAGAGAGAGGGAGAAGCGGAGAGATGTTAAAGAGAAGGATAGGGCACGGGTTCATGATGTCGATAGAGAAAAAGTGAGGGATAGAAAGAGGGAAAGGGATAGGGAAGAGAAAGAGAAGGAGAGAGTAAAGGAGAAAGAAAGAGATAGGGAAGAGAAAGAAAAGGAGAGAGTGAGGGATAGGGAAGAGAAGGAAAAGGAGAGAGTGAGGGAGAGGGAAGAGAAGGAAAAGGAGAGAGGGAGGGAGAGGGAAGAGAAGGAAAAGGAGAGAGGGAGGGAGAAAGAAAGAGAGAGGGAGAGAAAGGAGGATAAGGAGAGGATTAGAGAGAAAGAAAGGGTAAGGGAAAGGCGGGATCATGAGAGAGAGAAGGAAAAGGAAAAGGAAAGAGATAAAGGGAGGAGAGGACGAGAGAGGGAGAAGCATAGAGATGTTGATAGTGAAAACAGTGATGGTGAGTTGAGGGAGAGAAATCGGAAGCGGCATAAGAAAGAGGACGAGGATTATAAGGGGAGAGAGAAGGAAAAGAGTTCTAGCAAATCAAACAGGAAAATTGAGGGACTTGATGCAAGCCCTAGAAGAAAGAGTGACGGTGATGACTCGGATTCTAAAGACAGAGAGAAAAAACCTACCCGTGAGGAGGAGATGGAAGATGAGCAAAGGAGGTTGGACGATGAAATGGAAAAGCGGAGGAGAAGAGTTCAAGAGTGGCAAGAGTTAAGGAGGAAGAAGGAAGAAGCGGAAAGAGAAAAGCAAGGTGAAGCAAGTGCTGCTGAACTTGAGTCTGGAAAAGCATGGACACTTGAAGGGGAGGAATCTGATGATGAAGATGGAACAGGTAAACATACTGCTATGGATGTAGACGATGACGACAAACTTGCTGATAAGGAACCTATGGAGTCGATGGTGGTAGATGTTGACAATGTAACAGTTGCGCCTGATTTACAAAATGGAGATACTGGTGCTCCTTCAGACGAGGAAATAGACCCATTGGATGCTTTTATGAATTCTATGGTTCTTCCTGAGGTTGAGAAGCTGAACAATGCTGTTAACTCAACACCTTCTGATAAAACTTCTGACTTGAAACCCAAAGATAAAGGGGACGGACGTAGTAATGGCGGGCAGTCAAGGAAAGGTTCAAGTAAATCTATTGGCAGGATAATTCCTGGCGAAGAGTCCGACTCAGATTATGCTGATCCTGAAACTGACGGGGATCCAGTAGAAGAAGATGATGACGAGTTCATGAAAAGAGTGAAGAAAACGAAAGTTGAAAAACTTTCGATAGTTGACCACTCAAAGATTGACTATATACCATTCAAAAAGAATTTCTATATTGAAGTGAAGGAGGTCTCAAAAATGACTCTCGAAGAAGTTGCATTATACAGGAAGCAGTTAGAGTTGAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAGTCATGGAACCAGACTGGACTTACGAGCAAAATTTTGGATACAATAAAGAAGGCGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCGTTGCCTGTAATTATGAGTGGCCGAGATTGCATAGGCATTGCCAAAACCGGGTCAGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTCTTGCAGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGAGAACTTGTTCAACAGATTCACAGTGATATAAAGAAGTTTACAAAGGTAATGGGTATCAGGTGTGTCCCAGTCTATGGAGGCTCTGGTGTCGCTCAACAAATCAGTGAGTTGAAACGTGGTACCGAGATAGTTGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTAGTGGGAAAATAACTAACCTGCGTAGAGTCACCTATCTGGTAATGGATGAGGCAGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACAAGAATTGTTCAGAATATTCGGCCAGATCGTCAAACAGTTCTCTTCTCTGCCACTTTTCCCCGTCAGGTTGAAATTTTAGCTCGCAAGGTTTTGAATAAACCTGTTGAAATGCAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATTGCACAGTTAGTTGAAGTGAGGCCAGAAAATGAGAGGTTCCTACGACTCTTGGAACTACTTGGAGAATGGTACGAGAAGGGAAAGATTTTAATATTTGTCCACTCACAGGAGAAATGTGATGCATTGTTCAAGGATCTACTCAGGCACGGATATCCTTGTCTTTCTCTTCATGGAGCTAAGGATCAAACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTTTGCAATTTGTTGGTTGCGACAAGTATTGCTGCTAGGGGATTAGATGTCAAGGAGCTAGAATTGGTAATCAATTTTGATGTTCCAAACCACTATGAAGATTACGTACATCGTGTTGGGCGCACTGGTCGTGCTGGCCGGAAAGGTTGTGCCATCACATTTATTTCCGAAGAAGATGCGAGATATGCACCAGATCTGGTGAAAGCTTTGGAGCTGTCTGAGCAGATTGTTCCCGATGATCTGAAATCCCTTGCTGATGGCTTTATGGCGAAAGTGACTCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGTAAGGAAAGCAGCAAAGAAAGCTCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGACGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCACCCTGCTCTTGCTCAGATTATTGCTGCGACAAAAGCAAATGCTCCCTCAATGCCTACTCCCATCTCCGCAACCCAACTGATTTCAAATGGAGGGCTGCCTGTTTCTTTGCCTTCTGTTCTTGGTCTCCAGACTGCAACAGTCTTGCCTGGAACAGGGCTACCCCTTGCTACAAACGACGGGGCAGCTCGAGCTGCACTAGCTGCTATAAACCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCCGAACTGGAAATAAATGATTTCCCTCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACTTTAGGCCCCATTTCGGAGTGGACTGGAGCTGCCATTACCACTAGGGGACAGTATTTCCCACCTGGCAAAGTTGCTGGACCTGGGGATCGCAAACTCTATTTGTTCATTGAGGGTCCTAGTGAGCAGTCAGTTAAGAGAGCCAAAGTAGAACTGAAGCGTGTTTTGGAAGACATCACTAATCAGGCTTTGCAACTACCTGGTGGAACTCAACCAGGCAAATACTCTGTTGTATAA 3552 0.4406 MDEGKHKLRKEEGDSKRSHRDRDRDRTGERGKEKDRSDGRHKDNREKRDRESRRHDREKSTDSDDKHDREREKRRDVKEKDRARVHDVDREKVRDRKRERDREEKEKERVKEKERDREEKEKERVRDREEKEKERVREREEKEKERGREREEKEKERGREKERERERKEDKERIREKERVRERRDHEREKEKEKERDKGRRGREREKHRDVDSENSDGELRERNRKRHKKEDEDYKGREKEKSSSKSNRKIEGLDASPRRKSDGDDSDSKDREKKPTREEEMEDEQRRLDDEMEKRRRRVQEWQELRRKKEEAEREKQGEASAAELESGKAWTLEGEESDDEDGTGKHTAMDVDDDDKLADKEPMESMVVDVDNVTVAPDLQNGDTGAPSDEEIDPLDAFMNSMVLPEVEKLNNAVNSTPSDKTSDLKPKDKGDGRSNGGQSRKGSSKSIGRIIPGEESDSDYADPETDGDPVEEDDDEFMKRVKKTKVEKLSIVDHSKIDYIPFKKNFYIEVKEVSKMTLEEVALYRKQLELKIHGKDVPKPVKSWNQTGLTSKILDTIKKANFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVLAGDGPIGLIMAPTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEMQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLKSLADGFMAKVTQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDISQHPALAQIIAATKANAPSMPTPISATQLISNGGLPVSLPSVLGLQTATVLPGTGLPLATNDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKVAGPGDRKLYLFIEGPSEQSVKRAKVELKRVLEDITNQALQLPGGTQPGKYSVV* 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5041 1183 CDD SF2_C_DEAD 766 896 - -
Psa1g5041 1183 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 700 708 IPR000629 -
Psa1g5041 1183 MobiDBLite consensus disorder prediction 1 323 - -
Psa1g5041 1183 Gene3D - 756 929 IPR027417 -
Psa1g5041 1183 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 545 573 IPR014014 GO:0003724
Psa1g5041 1183 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 215 997 - -
Psa1g5041 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 903 IPR027417 -
Psa1g5041 1183 SMART helicmild6 806 887 IPR001650 -
Psa1g5041 1183 MobiDBLite consensus disorder prediction 331 368 - -
Psa1g5041 1183 Coils Coil 93 197 - -
Psa1g5041 1183 Gene3D - 498 755 IPR027417 -
Psa1g5041 1183 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 782 926 IPR001650 -
Psa1g5041 1183 SMART ultradead3 564 769 IPR014001 -
Psa1g5041 1183 CDD DEADc_DDX46 534 755 - -
Psa1g5041 1183 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 576 754 IPR014001 -
Psa1g5041 1183 Coils Coil 279 323 - -
Psa1g5041 1183 Pfam DEAD/DEAH box helicase 570 741 IPR011545 GO:0003676|GO:0005524
Psa1g5041 1183 MobiDBLite consensus disorder prediction 1 479 - -
Psa1g5041 1183 Pfam Helicase conserved C-terminal domain 779 887 IPR001650 -
Psa1g5041 1183 MobiDBLite consensus disorder prediction 460 476 - -
Psa1g5041 1183 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 215 997 - -
Psa1g5041 1183 MobiDBLite consensus disorder prediction 961 985 - -
Psa1g5041 1183 MobiDBLite consensus disorder prediction 424 438 - -
Psa1g5041 1183 MobiDBLite consensus disorder prediction 961 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5041 Psa-Chr1 368684516 368691697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5041 543 907 Eukaryotic Initiation Factors Gene Family AT3G19760 32.791 1.42e-57 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5041 K12811 - gmx:100784306 1587.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g5041 1 368684516 368691697 Psa1g5041 1 368684516 368691697 ECH