Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5039 ATGAGATTGAAGAAGAAGAACATGGGAAGAAGAAACGGTGGTGGTGGCGGCGGCGGTGGCGGTGGAGGAGGAGGGTCTCTGCAGTTCGCTCTTCGCCGTCGAGTTGAATCCTGCAAATCAATGTACAAAACCGCCGAAGAAATCGTCGATCATCTTCGCTCAAATTACCCTGATTACCACCGAACCAAGTATCAAACCCTAATTCGACTTGTTGAGGATGCTATTCAATTTTCCAACAATACTCCCACAAGGAACCATAACCAAAACAACAATGCCGACGGCAACGATGACGAAGATGAGAATCGAAGTGCTTCTCGAAAGAGACGCAAGAAAATTAACGATGAATCTGAAGATAGATTGCAAAAGATGGAAGCACTTCACATTAAAGCAAGGATGAGTTCGCAGGCTCCATCAACTTCCTCCGGTTCTGCTTCGGCTAGCAGTGACGATGGTGAAGAAGACGGTGCAGTTTCGACATCCGAAGACGGGATTTACAGCGAGAAAGTTGAACCTGCTTTTGACTTGATGAAGGATATGCTGCGACATTCATATACAGGAACAACAAAGTCAGTACCTGTGGTGGAAGAAAAAGAAAAGAACATTGAATTGGATATCGGTAATACAAGTAAGGCCGCTATTACTGTGAATGCAGATGGTGGTAAATCCAAATCGTGCGCGACAACAGGGAAACACTCTAAGGGTTCGGTTTCTAATACTGGTGGCAAGGGTTCGGTTTCTAATACTGGTGGCGGTAAAGGCGGCGGTGATGTTGAGATGAAAGGGAAAGGGGGGCCGATGTTTAAGGATTTGGGTGGAATGAAGGCTATTATAGAGGAGTTGATAATGGATATTGTGTCATTGTGCAATCCTCAATTGCCTAGACATTTAGGGGTGAAACCAGTTACTGGAATTTTGTTGCATGGACCACCTGGTTGTGGAAAGACTAGACTTGCTCATGCTATAGCCAATGAAACTGGTCTTCCTTTTCATCATATTTCAGCTACGGAGGTGATTTCTGGAGTCTCAGGTGCATCTGAAGAATATATTAGAGAGCTTTTCGATAAAGCAAAAAGGACCGCTCCATCAATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAGAATTTACAGCGTGAGATGGAGAAACGAATTGTGACCCAGTTAATGACTTCCATGGATGAACCAGAGAGTTCTGATGAACCTCGTGGCTATGTGCTTGTAATCGGGGCCACAAATAGGCCTGATTCTCTTGACCCCGCTCTTCGACGGCCTGGTCGGTTTGATCGTGAGTTTCTTGTTGGCGTTCCCGATGAATCTGCCAGGGTGGAGATCCTTTCAGTGCTTACTCGCAATCTTAAACTTGATGGTTCGTTTGATCTGCACAAAATAGCCAGGTCTACGCCAGGGTTTGTTGGTGCTGATTTGACTGCTCTGGCTAACAAAGCTGGTATTCTGGCAATGAAGAGGATACTTGATGAAAGGAAGCGTGAATTATCTCAAGATAGCATGGATGAGGATACTCAAGGCTGGTGGAAAGAACCTTGGTTGCCTGAAGAAATAAATAAGTCTGCTATAAAAATGTCTGATTTTGAGGAAGCAGCCAAAATGGTGCAGCCTTCAGCAAGAAGAGAAGGGTTCTCTTCCATTCCTAATGTTAAATGGGAAGATGTTGGCGGGCTTGATATATTAAGGCATGAGTTTGATCGCTATATTGTAAGGCGTATTAAATATCCTGAGCTGTATGAGGGAATCGGGATGAATCTCGAGTCTGGATTCTTACTATATGGACCTCCAGGATGTGGTAAAACACTTATTGCCAAGGCTGTTGCCAATGAGGCGGGAGCTAATTTCATTCATATTAAGGGACCCGAGCTTCTAAATAAGTATGTCGGGGAAAGCGAGCTTGCGGTGCGGACATTGTTTATTCGTGCAAGGACTTGTGCACCATGTGTACTATTTTTTGATGAGGTTGATGCTCTGACTACCGAACGTGGTAAAGAAGGTGGATGGGTTACTGAAAGACTATTGAACCAGTTGCTTATTGAGTTAGACGGTGCTGAGAATCGGAGAGGTGTATTTGTCATTGGTGCAACAAATAGGCCCGAGGTGATGGACCGTGCTCTCTTGCGGCCTGGTAGGTTCGGTAAACTGCTTTATGTTCCTCTTCCAAGCCCAGATGGCCGGGTTTTGATATTGAAAGCTCTTGCAAGGAATAACCATATTGATTCTAGTGTGGATTTGAATGCCATTGGAAGAATGGAATCATGCGAAAATCTTAGTGGTGCCGATCTTGCAGAAGTGATGAATGAAGCAGGAATGATTGCTCTTGATGAGAAGTTGAGCTCAAGTGAGACAACCTCATTGACCATTAAGACAAGTCATTTTGAGCTAGCACTAAGTAAATTTTCTCCGTCTGTGTCGGACAAGCAAAGGCAGTACTATGAGCGTTTGTCGAAGAGCCTAAGAACAGGAAGAGCCTAA 2490 0.4442 MRLKKKNMGRRNGGGGGGGGGGGGGSLQFALRRRVESCKSMYKTAEEIVDHLRSNYPDYHRTKYQTLIRLVEDAIQFSNNTPTRNHNQNNNADGNDDEDENRSASRKRRKKINDESEDRLQKMEALHIKARMSSQAPSTSSGSASASSDDGEEDGAVSTSEDGIYSEKVEPAFDLMKDMLRHSYTGTTKSVPVVEEKEKNIELDIGNTSKAAITVNADGGKSKSCATTGKHSKGSVSNTGGKGSVSNTGGGKGGGDVEMKGKGGPMFKDLGGMKAIIEELIMDIVSLCNPQLPRHLGVKPVTGILLHGPPGCGKTRLAHAIANETGLPFHHISATEVISGVSGASEEYIRELFDKAKRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTSMDEPESSDEPRGYVLVIGATNRPDSLDPALRRPGRFDREFLVGVPDESARVEILSVLTRNLKLDGSFDLHKIARSTPGFVGADLTALANKAGILAMKRILDERKRELSQDSMDEDTQGWWKEPWLPEEINKSAIKMSDFEEAAKMVQPSARREGFSSIPNVKWEDVGGLDILRHEFDRYIVRRIKYPELYEGIGMNLESGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFIRARTCAPCVLFFDEVDALTTERGKEGGWVTERLLNQLLIELDGAENRRGVFVIGATNRPEVMDRALLRPGRFGKLLYVPLPSPDGRVLILKALARNNHIDSSVDLNAIGRMESCENLSGADLAEVMNEAGMIALDEKLSSSETTSLTIKTSHFELALSKFSPSVSDKQRQYYERLSKSLRTGRA* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5039 829 MobiDBLite consensus disorder prediction 91 126 - -
Psa1g5039 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 502 IPR027417 -
Psa1g5039 829 CDD AAA 303 437 - -
Psa1g5039 829 SMART AAA_5 591 727 IPR003593 -
Psa1g5039 829 SMART AAA_5 300 440 IPR003593 -
Psa1g5039 829 MobiDBLite consensus disorder prediction 1 25 - -
Psa1g5039 829 PANTHER AAA-FAMILY ATPASE 33 823 - -
Psa1g5039 829 CDD AAA 593 725 - -
Psa1g5039 829 ProSitePatterns AAA-protein family signature. 408 426 IPR003960 GO:0005524|GO:0016887
Psa1g5039 829 Gene3D - 553 818 IPR027417 -
Psa1g5039 829 MobiDBLite consensus disorder prediction 132 148 - -
Psa1g5039 829 ProSitePatterns AAA-protein family signature. 695 713 IPR003960 GO:0005524|GO:0016887
Psa1g5039 829 Gene3D - 439 547 - -
Psa1g5039 829 Gene3D - 257 437 IPR027417 -
Psa1g5039 829 MobiDBLite consensus disorder prediction 221 256 - -
Psa1g5039 829 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 33 823 - -
Psa1g5039 829 MobiDBLite consensus disorder prediction 221 246 - -
Psa1g5039 829 Gene3D - 726 803 - -
Psa1g5039 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 822 IPR027417 -
Psa1g5039 829 Pfam AAA+ lid domain 461 503 IPR041569 -
Psa1g5039 829 Pfam AAA+ lid domain 747 799 IPR041569 -
Psa1g5039 829 Pfam ATPase family associated with various cellular activities (AAA) 304 437 IPR003959 GO:0005524|GO:0016887
Psa1g5039 829 Pfam ATPase family associated with various cellular activities (AAA) 596 724 IPR003959 GO:0005524|GO:0016887
Psa1g5039 829 MobiDBLite consensus disorder prediction 79 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5039 Psa-Chr1 368605975 368612720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5039 527 826 Calmodulin-binding Proteins AT3G56690 42.053 5.83e-66 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5039 K14571 - gmx:100809594 1038.1