Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5034 ATGCCAAAATCCAAGAGAAACAAGCAAGTTACACTTTCAAAGACAACGAAAAAGGGAAGAGGCCACAAAGAAGTGATTATTAACGCAATAAGAGATGCAGCTGAAAAATTCAATTCGGTTTACGTTTTTTCTTTTGAGAATATGAGGAATAAGAAACTGAAAGAGTTTAGAGATGAGTTGAAAGCAACTAGTAGATTTTTTCTTGGATCTAACAAAGTAATGCAAGTTGCTCTGGGTCGTTCTGCTTCTGATGAAATTAAACCTAATCTCTATAAAGTTTCAAAGTTATTGCGTGGAGATGCTGGAATGGTTTTTACTAATATTCCTAAAGAAGAAGTTGAGAGGCTGTTTAATGAATTTGAGGAATTTGATTTTGCAAGAACAGGAGGCATTGCCACAGAAAAGGTGGAACTCAAGGAAGGTCCTTTAGACCAGTTCACACATGAGATGGAACCTTTTCTGCGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGAGTCGTGGAGCTTGTTTCTGATTTTGTTGTTTGCGAGGAAGGAAAGCCTTTGTCACCTGAAGCAGCTCGCATACTGCGTTTGATGGGAGTCAAGATGGCTACGTTTAAACTGAACCTTATTTGCAGGTGGAGTGCTGATGATTTTGAACTCTACATTGATGGACCCGGCGATTCAGATGTTGAATGCTCATAG 690 0.3928 MPKSKRNKQVTLSKTTKKGRGHKEVIINAIRDAAEKFNSVYVFSFENMRNKKLKEFRDELKATSRFFLGSNKVMQVALGRSASDEIKPNLYKVSKLLRGDAGMVFTNIPKEEVERLFNEFEEFDFARTGGIATEKVELKEGPLDQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEAARILRLMGVKMATFKLNLICRWSADDFELYIDGPGDSDVECS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5034 229 CDD Ribosomal_P0_like 22 184 IPR033867 GO:0000027
Psa1g5034 229 Gene3D - 30 212 IPR043141 -
Psa1g5034 229 SUPERFAMILY Ribosomal protein L10-like 20 144 IPR043141 -
Psa1g5034 229 Pfam Ribosomal protein L10 20 120 IPR001790 -
Psa1g5034 229 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
Psa1g5034 229 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 228 - -
Psa1g5034 229 Gene3D - 125 198 IPR043164 -
Psa1g5034 229 PANTHER RIBOSOME ASSEMBLY FACTOR MRT4 1 228 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5034 35 217 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 20.219 1.06e-09 55.8