Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5018 ATGAAGACTCACAACGAAATGATTAATAACAGTAACAACATCTCCGACAACATAAAACTTGAAACATTAAACACATTCCTCATCAAACCCTCCAAACCCACACCACCAAACCTTAAAATCTACAAACTCTCTTTACTCGACCAACTTTCACCCAATATTCATGGCAACTCCACCTTCTTCTTCCCCAACAACTCTTCTCATTCTAACTCCTTCTCTCATAACTCCAAACTTCTCCAAACCTCACTCTCCCAAACATTATCTCTATTTTACCCTTTCGCCGGTCGTCTCCAAGACCCCACCGACACCACCATTCTCTGCAACGACGACGGTGTTTTATTCATCGAATCTCAAACCACCACCACTCTCTCAGAACTCCTAACCAAACCTAATTTCAACACCCTAGAATGCTTCCTCCCAGTCCCAACCACCGAAAACAAAAACATGTTGTTGTTACTCCGTTTTACTTTATTCAGTTGCGGTTCCACTGCACTTACCATATCCCTCACACACAAGATCGCCGACTTTAACACCCTTATGACGTTTTTCGACACTTGGACCACCGTATGCGCCACCACAAAATCAGTTCCACTACCTGACTTAACCACCGCATCCACTCTCTTTCCTCTGAGAGAAATCCCCGAGATTCCTGCTTCATATAAATCTTCATCCAAAAAATTCACTACTAGAAGATTTATTTTCGATGCATGCAAAATAGAAGAACTTAAGAGAAAAATCAAAAGTGAAATCGAGTTTCACCCTTCAAGGGTGGAGATTCTTCTAGCTCTCATTTGGAAGTGTGCTATTTCAGCTTCTCGTTCAAAAACACAGTCGTTTAACCGTTCAATTTTGTATCAAGCTGTAAACCTTCGTCCACGTATGGACCCTGTCGTACCAGAAACAGCCGTTGGAAACTTTGTGTGGCCGTTTGCGGTGACAATTGAAGAAGAGTGCCACATGGCATTACATGAGATGGTGAAGAGAATGAGAAATGGTATGAAAGAGTTTATAGAGAAGGAAGCAAAGACGTTTAAGGATGAAGGTGGGTTTAAAGTCGTGATGGAGAGTTTCAAAGATAGGGTTGAGAGTTTGATTGGGAATGAGAAGTAG 1107 0.4192 MKTHNEMINNSNNISDNIKLETLNTFLIKPSKPTPPNLKIYKLSLLDQLSPNIHGNSTFFFPNNSSHSNSFSHNSKLLQTSLSQTLSLFYPFAGRLQDPTDTTILCNDDGVLFIESQTTTTLSELLTKPNFNTLECFLPVPTTENKNMLLLLRFTLFSCGSTALTISLTHKIADFNTLMTFFDTWTTVCATTKSVPLPDLTTASTLFPLREIPEIPASYKSSSKKFTTRRFIFDACKIEELKRKIKSEIEFHPSRVEILLALIWKCAISASRSKTQSFNRSILYQAVNLRPRMDPVVPETAVGNFVWPFAVTIEEECHMALHEMVKRMRNGMKEFIEKEAKTFKDEGGFKVVMESFKDRVESLIGNEK* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5018 368 Pfam Transferase family 19 340 - -
Psa1g5018 368 Gene3D - 223 364 IPR023213 -
Psa1g5018 368 PANTHER VINORINE SYNTHASE-RELATED 17 363 - -
Psa1g5018 368 Gene3D - 17 214 IPR023213 -
Psa1g5018 368 PANTHER F21J9.9 17 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5018 Psa-Chr1 368204346 368205452 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5018 18 312 Monolignol Biosynthesis Gene Families AT5G48930 25.846 6.65e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5018 - - mtr:MTR_2g007880 484.567