Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5015 ATGTCATTCCGTAGCATAGTTCGTGACGTTCGTGATAGTTTTGGGAGTTTATCTAGGCGTAGTTTTGATGTCAAACTTGCTGGTCATCATCATAGGGGAAAATCTCATGGTTCGGTACAGGATCTGCATGATCAGCCGCTTGTTATTCAAAATAGTTGCTGGGCGAGCTTACCCCCAGAATTACTATTTGATGTAATTCGACGGCTAGAGGAGAGTGAGAATACTTGGCCTTCACGAAAGCATGTAGTTGCTTGTGCTTCTGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATCGTTAAGAGCCCCGAGTTCTGCGGCAAACTTACATTCCCCGTGTCCCTGAAGCAGCCTGGGCCGCGTGATGGAATCATTCAATGCTTTATCAAAAGAGATAAATCTAACTTAACATACCACCTATTCCTTTGTCTGAGCCCCGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTCTCTGCTAAGAGGACAAGAAGAACAACCTACACTGAGTATGTTATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAATACTTACATTGGAAAGCTGAGATCAAACTTTCTCGGAACAAAATTTATTATATATGATACACAGCCTCCCCACACTTCTGCCCATATATGTCCTCCGGGGATTGGGAAGACGAGCCGGAGATTTTCTAAAAAGGTATCGCCTAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAACTGAATGTTCTCGGGACTCGTGGCCCAAGGAAGATGCACTGCATTATGCATTCAATACCAAATTCAGCCCTTGATGCGGGCGGTTCTGTTCCCGGACAGCCAGAGCTTATTCCCCGTTCCCTGGAGGACTCATTCCGTAGCATCTCATTTTCGAAGTCCCTAGATCATTCCATCGAGTTCAGCAGTTCAAGATTTTCTGAGATCGGGGGATCATGCAACGAGGATGATGATGGCAAGACAAGACCGTTGGTTCTGAAAAACAAGCCTCCAAGATGGCACGAACAATTGCAGTGCTGGTGCCTTAATTTCCGCGGACGAGTAACTGTCGCGTCTGTTAAAAACTTTCAGCTGATTGCCTCCACCCAACCACCTGCTGGCGCACCGACGCCATCTCAACCAGCTCCACCAGAACATGATAAGATTATTCTGCAATTCGGCAAAGTTGGGAAAGATATGTTCACCATGGATTATCGATATCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAGCTGGCTTGTGAATAA 1284 0.4533 MSFRSIVRDVRDSFGSLSRRSFDVKLAGHHHRGKSHGSVQDLHDQPLVIQNSCWASLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPHTSAHICPPGIGKTSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIPRSLEDSFRSISFSKSLDHSIEFSSSRFSEIGGSCNEDDDGKTRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5015 427 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Psa1g5015 427 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Psa1g5015 427 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Psa1g5015 427 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Psa1g5015 427 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Psa1g5015 427 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Psa1g5015 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Psa1g5015 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Psa1g5015 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 427 - -
Psa1g5015 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Psa1g5015 427 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Psa1g5015 427 Pfam F-box domain 54 101 IPR001810 GO:0005515
Psa1g5015 427 Pfam Tub family 115 422 IPR000007 -
Psa1g5015 427 Gene3D - 49 101 - -
Psa1g5015 427 SUPERFAMILY Tubby C-terminal domain-like 103 427 IPR025659 -
Psa1g5015 427 PANTHER TUBBY-RELATED 1 427 - -
Psa1g5015 427 Gene3D Tubby Protein; Chain A 113 421 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5015 Psa-Chr1 367949101 367953573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5015 1 427 TUB Transcription Factor Family AT1G76900 69.913 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Psa1g5015 Tub 4.5e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5015 K19600 - gmx:100814578 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g5015 1 367949101 367953573 Psa1g5015 1 367949101 367953573 ECH