Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5013 ATGGTTGGAAGTGTTGATGTTTTGGTTGATGATTTGAGCATTAACAGACCAGTTGATTTATTGCCTGATGATTTTGATGTATCCGCCATTATCAAAGATCCCGTGCCTCCTGTAGTTGCAGACATTATTGGCAAGGTGGAGGCTCAGTTTAATGCAGGAAATGAGAAAAGAGAAATAGTTTTGGGAAGAAATATTCATACCTCGTGTCTTGAAGTCACGGAGCCAGAAGATGATGATGACATTACTGGGGATCGTGATGCTCATATGGCAAGTGTGTTGGCCAGATACAGAAAATCTTTAACTGAAAGGACAAAGTATCATTTAGGCTACCCCTATAATTTGGATTTTGATTACGGTGCACTCTCTCAACTTCAGCACTTTTCCATAAACAACCTTGGAGATCCATTCATTGAAAGCAATTATGGTGTCCACTCCCGGCAGTTTGAAGTTGGTGTTTTGGATTGGTTTGCCAGATTGTGGGAACTGGAGAAAAATGAGTATTGGGGCTATATAACAAACTGTGGCACAGAAGGCAATCTTCATGGAATCCTAGTTGGGAGAGAGGTGTTACCAGATGGGATTTTGTATGCCTCGCGGGAGTCACATTATTCAATTTTTAAAGCTGCTCGTATGTACCGAATGGAATGTGTGAAGATTGAGACTCTTAATTCAGGCGAGATTGATTGTGATGATTTCAAGGCCAAACTTCTTTGTCACCAGGACAAGCCAGCAATTATAAATGTGAACATAGGTACAACTGTGAAAGGAGCCGTGGATGATCTTGATCTGGTTATACAGAAACTTGAAGAAGCTGGATTTTCACACGACAGGTTCTACATTCACGTTGATGGTGCATTGTTTGGTCTCATGATGCCTTTTGTGAAACGAGCTCCAAAAGTAACTTTTAAGAAGCCTATTGGAAGTGTCAGTGTTTCTGGCCACAAATTTGTGGGGTGCCCCATGCCTTGTGGGGTGCAGATAACAAGATTGGAGCATATCAATGCTCTTTCCAGAAATGTGGAATACCTTGCGTCTAGGGACGCCACAATCATGGGTAGTCGAAATGGCCACGCTCCCATATTCCTTTGGTATACCTTGAACCGGAAAGGATACAGAGGCTTCCAGAAAGAAGTACAGAAATGCTTGCGAAATGCATTCTACTTCAAAGACCGCCTTATCGATGCTGGGATCGGTGCAATGCTTAACGAGCTTAGCAGCACAGTTGTATTTGAACGGCCACACGATGAGGAATTTATCCGCAAATGGCAGTTAGCATGCAAGGGGAACATCGCTCATGTGGTGGTGATGCCAAATGTCACTATTCAGAAACTTGATGAATTTCTAAACGAGCTTGTGCAGAAGCGTGTTGCTTGGTTTGAAGAGGGGAAGTATCAGCCTTATTGTATTGCATCAGATGTAGGTGAAAACAGTTGCCTATGTGCTCTGCATAAGTAA 1455 0.4268 MVGSVDVLVDDLSINRPVDLLPDDFDVSAIIKDPVPPVVADIIGKVEAQFNAGNEKREIVLGRNIHTSCLEVTEPEDDDDITGDRDAHMASVLARYRKSLTERTKYHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNEYWGYITNCGTEGNLHGILVGREVLPDGILYASRESHYSIFKAARMYRMECVKIETLNSGEIDCDDFKAKLLCHQDKPAIINVNIGTTVKGAVDDLDLVIQKLEEAGFSHDRFYIHVDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAFYFKDRLIDAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNVTIQKLDEFLNELVQKRVAWFEEGKYQPYCIASDVGENSCLCALHK* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5013 484 PANTHER SERINE DECARBOXYLASE 1 484 - -
Psa1g5013 484 SUPERFAMILY PLP-dependent transferases 103 453 IPR015424 -
Psa1g5013 484 Pfam Pyridoxal-dependent decarboxylase conserved domain 194 397 IPR002129 GO:0016830|GO:0019752|GO:0030170
Psa1g5013 484 Gene3D Aspartate Aminotransferase, domain 1 367 455 IPR015422 GO:0003824
Psa1g5013 484 Gene3D - 122 366 IPR015421 GO:0003824
Psa1g5013 484 PANTHER - 1 484 - -
Psa1g5013 484 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 308 329 IPR021115 GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5013 Psa-Chr1 367838960 367844922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5013 207 390 Calmodulin-binding Proteins AT1G65960 26.425 7.99e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5013 K25193 - gmx:100795577 870.152