Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5002 ATGAAAACTATATGGAATGGACTCCAAGGTTTGAAACCTGTGATGCTTATGGTTTTGGTTCAACTTGCATATGCTGCAGTTAATGTGCTTTACAAACTTGCTATCAATGATGGAATGACCGTAAAAGTTGCTACTGCTTATCGTTTAGCTTTTGGTTCAGCTTTCACTGTTCCTCTTGCTCTCATTTCTGAAAGAAAAAAGAGGCCAAAGCTGAGTTGGAGAGTGCTTTTCATGGCATTTCTTTGCGGCTTGTTTGGTGGAAGCTTATTTCAAAATCTTTTCTATGAGGCTTTGGCTTTAACATCAGCAACATTTGCATCTGCTATTTACAATCTCATTCCTGCCATCACCTTTATCATGGCCATTTTATGCGGTTTTGAAAGATTAAATTTAAGAGCAGCAGCTGGAAAAGCCAAAGTGTTGGGAACTCTAGCTGGAATTGGTGGAGCAATGATGTTGATTTTTCTCAAAGGTGTTGAAATTAATATCTGGCCATTTCACATCAACCTTATGCATCCAAATCAACATCAAAATAGCCATGGTGATTCTGGTAGTAAATGGTTGGGTGTTCTATGTGCAGTAGCAAGTTGTTTCTCTTTTGCTCTTTGGCTCATAATTCAGGCTAAGATGAGCAAAGAATATCCAAGTCATTACTCAAGTACAGCTTTAATGTCTACAATGGGAGCAATACAAGCCACTGGTTTTGCTCTTTGTTTTGAAAAAGATTGGAGCCAATGGAAGTTGGGTTGGAATATAAGACTTCTCGCTGTCGCGTATTCGGGAATCGTTGCCTCTGGATTAGTGGTTATTGTGACATCTTGGTGCATAAAGATGAGAGGCCCACTATTTGCATCTGTTTTCAACCCTTTAATGCTTTTGTTTGTCACTATTGTTGCTTCTTTGATGTTGGATGAAAAACTATACTTAGGAAGTTTGATTGGAGCAGTGTTGATTGTGTGTGGATTATATATGGTTCTTTGGGGTAAGAGTAAAGAGATGAAAAAGATTGATCAATTGGCTACATCAAAAATTGCACAAGAAGCTGAAGATATTGAAGTTGTTGTAATGTCTACACCCGTAGTACTAGATCATGATAAATTACATGTCTCCAACAACAATCACATTGAAGTTGTTAAAGATCATGACCCAAAAAATGAAGAAATTAAGAGTATTGGAGATGATCCAAAGTGA 1191 0.3762 MKTIWNGLQGLKPVMLMVLVQLAYAAVNVLYKLAINDGMTVKVATAYRLAFGSAFTVPLALISERKKRPKLSWRVLFMAFLCGLFGGSLFQNLFYEALALTSATFASAIYNLIPAITFIMAILCGFERLNLRAAAGKAKVLGTLAGIGGAMMLIFLKGVEINIWPFHINLMHPNQHQNSHGDSGSKWLGVLCAVASCFSFALWLIIQAKMSKEYPSHYSSTALMSTMGAIQATGFALCFEKDWSQWKLGWNIRLLAVAYSGIVASGLVVIVTSWCIKMRGPLFASVFNPLMLLFVTIVASLMLDEKLYLGSLIGAVLIVCGLYMVLWGKSKEMKKIDQLATSKIAQEAEDIEVVVMSTPVVLDHDKLHVSNNNHIEVVKDHDPKNEEIKSIGDDPK* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5002 396 PANTHER WAT1-RELATED PROTEIN 12 361 IPR030184 GO:0016021|GO:0022857
Psa1g5002 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 142 - -
Psa1g5002 396 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020|GO:0016021
Psa1g5002 396 Pfam EamA-like transporter family 12 153 IPR000620 GO:0016020|GO:0016021
Psa1g5002 396 PANTHER WAT1-RELATED PROTEIN 12 361 - -
Psa1g5002 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5002 Psa-Chr1 367416257 367418851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5002 11 349 Nodulin-like Gene Family AT1G25270 42.566 7.53e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5002 - - gmx:100798755 585.489