Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5000 ATGTCTGATTCGGATGAGTTTCGTTGCTTCATTGGTGGCCTTGCATGGTCAACCTCGGATAGAAAGTTAAAGGAAGCATTTGAAAAGTATGGCAAGCTTCTTGAGGCTAAGGTTGTGGTTGACAAATTCTCTGGGCGTTCTCGTGGTTTTGGGTTTGTCACATTTGATGACAAGGAAGCAATGGAAGAGGCTATTGAGGCCATGAATGGAATTGACTTGGATGGTCGAACTATTACTGTAGATAAAGCCCAACCTCAAGGAAATAGAGACGATGATGATCGTCGAGGTGGTCGTGACTCACGTGATCGCAATCGTGGCCGAGATTATGGAGGTGGTCGAGGGTCTAATGGCGGTGAATGCTTCAAGTGTGGTAAACCTGGTCATTTTGCAAGAGAATGTCCTAGTGAAGGAGGAGAAAGAGGGGGGAGATATGGTGGAAGAGAAAGTAGATATAGCGGTGGCTATGGTCCTGAGAGGAATGGTGGCGGTCGTGATAGGGATGGTGGCGGTCGTGATAGGGATGGTGGTGGGCGTGACAGGGATGGTGGAGGTCGTGATAGGGATGGTGGAGGTCGTGATAGGGATGATCGTGATAGGGATGGTGGTGGGCGTGACAGGGATGGTGGAGGTCGTGATAGGGATGGTGGAGGTCGTGATAGGGATGGTGGTGGGCGTGACAGGGATGGTGGCGGTCGTGACAGGGATCGTGCTGGACCATATGAGCGTCGTGGATCATCTGGAGGTTATCGTTGA 753 0.51 MSDSDEFRCFIGGLAWSTSDRKLKEAFEKYGKLLEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQGNRDDDDRRGGRDSRDRNRGRDYGGGRGSNGGECFKCGKPGHFARECPSEGGERGGRYGGRESRYSGGYGPERNGGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDDRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDRAGPYERRGSSGGYR* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5000 250 MobiDBLite consensus disorder prediction 85 109 - -
Psa1g5000 250 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 162 - -
Psa1g5000 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Psa1g5000 250 MobiDBLite consensus disorder prediction 134 250 - -
Psa1g5000 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Psa1g5000 250 PANTHER TRANSFORMER-2-RELATED 1 162 - -
Psa1g5000 250 SMART rrm1_1 8 81 IPR000504 GO:0003723
Psa1g5000 250 MobiDBLite consensus disorder prediction 76 113 - -
Psa1g5000 250 MobiDBLite consensus disorder prediction 160 241 - -
Psa1g5000 250 SUPERFAMILY RNA-binding domain, RBD 3 117 IPR035979 GO:0003676
Psa1g5000 250 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Psa1g5000 250 Gene3D - 116 171 - -
Psa1g5000 250 Gene3D - 2 115 IPR012677 -
Psa1g5000 250 Pfam Zinc knuckle 119 135 IPR001878 GO:0003676|GO:0008270
Psa1g5000 250 ProSiteProfiles Zinc finger CCHC-type profile. 120 135 IPR001878 GO:0003676|GO:0008270
Psa1g5000 250 SUPERFAMILY Retrovirus zinc finger-like domains 112 137 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5000 Psa-Chr1 367305538 367307682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5000 9 95 Eukaryotic Initiation Factors Gene Family AT1G71770 40.230 1.19e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5000 - - lang:109329957 220.32