Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4990 ATGGAACGACTGACTTTGTGTTCTAAAGCTTACTTTGTTTTTTGGGCAATTTTGGTTTTTGATTTTGTGCTTAAAGGTTCTTCTAATGTGGAAGGTGATGCACTTAATGCATTGAAGAGCAACTTGAATGATCCTAACAATGTTCTTCAAAGTTGGGATGCTACCCTTGTCAATCCTTGCACGTGGTTTCATGTTACATGCAATGGCGATAACAGTGTGACCCGTGTTGATCTTGGAAATGCGGACCTCTCTGGTACACTGGTTTCACAACTTGGTGATCTCTCAAATTTGCAGTACTTGGAACTTTATAGTAATAATATAACAGGAAAAGTCCCAGAAGAGCTAGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACCATTTAAGTGGTACCATACCGAATTCATTGGGCAACCTTCAAAAACTACGTTTCCTGCGTCTCAATAATAACACCTTGACTGGCCACATTCCCGTATCTCTGACAAATGTTTCTACGCTGCAAGTTCTTGATCTGTCAAACAACAATCTAGAAGGGGATGTCCCAGTCAACGGTTCATTTTCATTATTTACCCCTATCAGTTATCAAAATAATCCTCGCTTGAAACAACCGAAAAATACTCCTGCACCACTTTCTCCACCGTCACCGGCTTCTTCAGGTAGTAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCCGGTGCTGCTCTTTTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAAAAGAAAACCACAGGATCATTTCTTTGACGTTCCCGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCTCTACGTGAGCTGCTAGTAGCAACCGATAACTTCAGTAACAAAAACATTCTAGGTAGAGGTGGATTCGGAAAGGTTTATAAAGGACGTTTAGCTGATGGCACCCTTGTAGCCGTAAAAAGACTTAAAGAGGAACGGACACAGGGTGGGGAGCTACAATTTCAAACAGAAGTTGAAATGATCAGTATGGCTGTGCATCGCAATTTGCTTCGGCTTCGTGGTTTTTGCATGACATCTACTGAACGTTTGCTTGTGTATCCTTATATGGCCAATGGAAGTGTAGCATCATGTTTACGAGAACGTAGTGAATCTGATCCGCCACTTGAGTGGCCTATGCGGAAAAATATTGCGCTGGGATCTGCCAGGGGACTTGCTTACTTGCACGATCATTGTGACCCTAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGAGGATTTCGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGATTATAAAGATACACATGTTACTACTGCCGTTCGTGGTACAATTGGGCATATAGCACCGGAGTACCTGTCAACTGGAAAGTCTTCAGAAAAGACTGATGTTTTTGGATACGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCGATTTAGCACGTCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAAGAAGTTGGAGACACTTGTAGATGCAGAATTGACGGGAAATTATGACGATGATGAGGTAGAGCAGTTAATCCAAGTGGCTTTACTATGCACACAAGGGTCGCCGATGGAAAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAAGGTGATGGTTTGGCAGAAAAATGGGAGCAATGGCAGAAAGAAGAGACGTATCGACAAGATTTTAACAACAACCACATGCATCACCCTAACGCAAATTGGATAGTAGTAGATTCAACTTCACATATCCAGCCAGATGAACTCTCAGGTCCTAGATGA 1854 0.4229 MERLTLCSKAYFVFWAILVFDFVLKGSSNVEGDALNALKSNLNDPNNVLQSWDATLVNPCTWFHVTCNGDNSVTRVDLGNADLSGTLVSQLGDLSNLQYLELYSNNITGKVPEELGNLTNLVSLDLYLNHLSGTIPNSLGNLQKLRFLRLNNNTLTGHIPVSLTNVSTLQVLDLSNNNLEGDVPVNGSFSLFTPISYQNNPRLKQPKNTPAPLSPPSPASSGSSNTGAIAGGVAAGAALLFAAPAIALAYWRKRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELLVATDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTSTERLLVYPYMANGSVASCLRERSESDPPLEWPMRKNIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDAELTGNYDDDEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEETYRQDFNNNHMHHPNANWIVVDSTSHIQPDELSGPR* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4990 617 PANTHER BNAA08G11770D PROTEIN 11 617 IPR031048 GO:0004675|GO:0005102|GO:0006468
Psa1g4990 617 SMART serkin_6 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4990 617 SUPERFAMILY L domain-like 31 194 - -
Psa1g4990 617 ProSiteProfiles Protein kinase domain profile. 291 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4990 617 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Psa1g4990 617 Gene3D Ribonuclease Inhibitor 28 211 IPR032675 -
Psa1g4990 617 SUPERFAMILY Protein kinase-like (PK-like) 270 566 IPR011009 -
Psa1g4990 617 Gene3D Phosphorylase Kinase; domain 1 260 367 - -
Psa1g4990 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Psa1g4990 617 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Psa1g4990 617 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 617 - -
Psa1g4990 617 Gene3D Transferase(Phosphotransferase) domain 1 368 585 - -
Psa1g4990 617 Pfam Protein kinase domain 292 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4990 Psa-Chr1 367185739 367191221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4990 14 617 Receptor kinase-like Gene Family AT4G33430 77.147 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Psa1g4990 Pkinase 5.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4990 K13416 - gmx:100800522 1043.11