Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4989 ATGGTTCATTTTCATCATTTACCTCAGTCAAGTGAGGATAATCCTGAAGTTCACCTTGGTCTGCCTAAGAGGTTTTCCTTGCGTGAGCTGCTAGTAGCGACAGATAAGTTCAATAACAAAAACATTATAGGCAGAGCTGCAATTTCAAACAGAAGTCGAAATGATCAGTATGGCTGTGCATCGCAATTTGCTCCGGCTACGTGGTTTTTGCATGTAGCATCATATTTACGAGAACGTAGTGAATCTGATCTGCAGCTTGAGTGGCCAATTCGGAAGAATATTGCGCTGGGATCTGCCAGGGGGCTTGTTTACTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGGTGTGAAAGCTACAAATATATTGTTGGATGAGAAATTTGAAGCAGTTGTTGGAGATTTCGGTTTAGCAAAGCTTATGGATTACAAAGATACACATGTTACTACTGCTGTTTGTGGTACCCTTGGGCATATAGCACCTGAGTACCTGTCAACCGGAAAGTCTTCAGAAAAGACGGGTGTTTTTGGATACGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGAGCTTTCGATCTAGCACGTCTTGCCAATGATGATGATATGATGTTGCTTGATTGGGTTAAAGGACTTCTCAAGGATAAAAAGTTAGAAACACTTGTAGATGCAGAGTTAAGGGGAAATTATGATTTCAATGAGGTAGAGCAGTTAATCCAAGTGGCTTTACTATGCACACAAGAGTCCCATGTGGAAAGACCAAAGATGTCTGAGGTTGTGAGAATGCTAGAAGGTGATGGTTTGTCTGAAAGAAGAGATCTATCTACATGA 834 0.4113 MVHFHHLPQSSEDNPEVHLGLPKRFSLRELLVATDKFNNKNIIGRAAISNRSRNDQYGCASQFAPATWFLHVASYLRERSESDLQLEWPIRKNIALGSARGLVYLHDHCDPKIIHRGVKATNILLDEKFEAVVGDFGLAKLMDYKDTHVTTAVCGTLGHIAPEYLSTGKSSEKTGVFGYGVMLLELITGQRAFDLARLANDDDMMLLDWVKGLLKDKKLETLVDAELRGNYDFNEVEQLIQVALLCTQESHVERPKMSEVVRMLEGDGLSERRDLST* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4989 277 Gene3D Transferase(Phosphotransferase) domain 1 71 275 - -
Psa1g4989 277 ProSiteProfiles Protein kinase domain profile. 1 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4989 277 SUPERFAMILY Protein kinase-like (PK-like) 74 265 IPR011009 -
Psa1g4989 277 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 48 - -
Psa1g4989 277 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 72 272 - -
Psa1g4989 277 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 4-RELATED 72 272 IPR031048 GO:0004675|GO:0005102|GO:0006468
Psa1g4989 277 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 4-RELATED 10 48 IPR031048 GO:0004675|GO:0005102|GO:0006468
Psa1g4989 277 Pfam Protein kinase domain 86 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4989 Psa-Chr1 367164518 367165849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4989 3 272 Receptor kinase-like Gene Family AT4G33430 64.984 9.08e-129 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Psa1g4989 Pkinase 4.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4989 K13416 - rcu:8277786 379.793