Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4980 ATGGATGTTTTATTATCCTTCAACTCAAGCTCAAGCCTAATCAACATTTCAAAACCATACAAACATCATCATAATCTTCCACTTTCAAATAATCATCAAACACAACCTCGTGCAAAACAGTTTTCAGTTACATGCAGAGCCACAAAAAGTGATGGAAACTTGTACAAGATACTATGTTTGAGTTCCAATACAGCCACAACAGATGATATAAAAAGAGCATATAGAACAATGGCTCTTCAGTATCATCCTGATGTTTGTCGTGATGGTTTGAAGAAAGAGGAATCAACCAAGATGTTTGTACAAGTTAATGAAGCTTATAAGACGCTGTCGAATCCAAAGCTTAAAGAAGAGTATGATTCAGAGTTGTTTGGTTTGGGTAATTTGAGAAGAAGTAAATGGATGGAACAAGTTGTTGAATTGAATAGAAAATCTCAAACAGAATGA 444 0.3446 MDVLLSFNSSSSLINISKPYKHHHNLPLSNNHQTQPRAKQFSVTCRATKSDGNLYKILCLSSNTATTDDIKRAYRTMALQYHPDVCRDGLKKEESTKMFVQVNEAYKTLSNPKLKEEYDSELFGLGNLRRSKWMEQVVELNRKSQTE* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4980 147 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 8 146 - -
Psa1g4980 147 CDD DnaJ 53 111 IPR001623 -
Psa1g4980 147 PRINTS DnaJ domain signature 56 74 IPR001623 -
Psa1g4980 147 PRINTS DnaJ domain signature 74 89 IPR001623 -
Psa1g4980 147 PRINTS DnaJ domain signature 94 114 IPR001623 -
Psa1g4980 147 SUPERFAMILY Chaperone J-domain 45 123 IPR036869 -
Psa1g4980 147 SMART dnaj_3 52 114 IPR001623 -
Psa1g4980 147 Gene3D DnaJ domain 38 143 IPR036869 -
Psa1g4980 147 Pfam DnaJ domain 53 119 IPR001623 -
Psa1g4980 147 ProSiteProfiles dnaJ domain profile. 53 122 IPR001623 -
Psa1g4980 147 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 8 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4980 Psa-Chr1 366785938 366786494 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4980 55 120 C2H2 Transcription Factor Family AT1G74250 39.706 1.76e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4980 - - vun:114187063 139.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4980 1 366785938 366786494 Psa1g4980 1 366785938 366786494 ECH
Psa7g2253 7 160966625 160967555 Psa1g4980 1 366785938 366786494 PCT