Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4978 ATGCATTCTCAAAACCAGAGAGAGAGAGAAACAAGAAAGAAAATGGATGTTTTATTATCCTTAAACTCAAGCTCAAGCCTAATCAACATTTCAAAACCATACAAACATCATCATAATCATCAAAGACAACCTCGCACAGTACACTTTTCTGTTTCATGCAGTGCCACAAAAAGTGTTTCTATTAATCATAAGCTAGATGAAGAGGATGGAAACTTGTACAAGATACTATGTTTGAGTTCTAAAACAGCAACAATGGATGACATAAAGAGAGCTTATAGAACATTGGCTCTTCAATATCATCCTGATGTTTGTCATGATCGATTGAAGAAAGAGGAATCAACTAGGATGTTTGTAAAACTGAATGAAGCTTATAAGATATTGTCAAATCCAAAGCTTAAAGAAGAGTATGATTCAAAGTTATTGGGTTTGAGTGATTTGAGAAGAAGTAAATGGATGGAACAAGTTGTTGAATTGAATAGAAGATCTCATACACGTAAGGCTGGTAGTGCATCATCATGGGGTAGTAGAATGAGAGCCAAGAATAATATCAACAAAGTTCATCAGAATAGCCAGTTTTTCAGTTAG 585 0.3436 MHSQNQRERETRKKMDVLLSLNSSSSLINISKPYKHHHNHQRQPRTVHFSVSCSATKSVSINHKLDEEDGNLYKILCLSSKTATMDDIKRAYRTLALQYHPDVCHDRLKKEESTRMFVKLNEAYKILSNPKLKEEYDSKLLGLSDLRRSKWMEQVVELNRRSHTRKAGSASSWGSRMRAKNNINKVHQNSQFFS* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4978 194 Pfam DnaJ domain 71 137 IPR001623 -
Psa1g4978 194 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 24 185 - -
Psa1g4978 194 CDD DnaJ 71 129 IPR001623 -
Psa1g4978 194 Gene3D DnaJ domain 56 165 IPR036869 -
Psa1g4978 194 ProSiteProfiles dnaJ domain profile. 71 140 IPR001623 -
Psa1g4978 194 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 24 185 - -
Psa1g4978 194 SMART dnaj_3 70 132 IPR001623 -
Psa1g4978 194 PRINTS DnaJ domain signature 74 92 IPR001623 -
Psa1g4978 194 PRINTS DnaJ domain signature 92 107 IPR001623 -
Psa1g4978 194 PRINTS DnaJ domain signature 112 132 IPR001623 -
Psa1g4978 194 SUPERFAMILY Chaperone J-domain 68 140 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4978 Psa-Chr1 366697505 366698482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4978 73 138 C2H2 Transcription Factor Family AT1G74250 42.647 2.90e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4978 - - zju:107427645 150.984