Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4961 ATGGCAGCTGCAACATCTGGTGCTGTGTTGAATGGTTTGGGATCTTCCTTCTTATCTGGTGGAAAGAGGAGCCAAACCTTGCTAGCTACTGCCATTGGAAGCAAAGTTGGTGTTGCAGCTGTTAGTCCTAAAAGACTTATTGTTGCTGCTGCTGCTTCTGCACCTAAGAAATCATGGATCCCTGGTGTTAGTTTCGGTGGAAACCTCGTCGACCCCGAATGGCTCGACGGATCGCTACCGGGTGACTTTGGTTTCGACCCACTAGGCCTTGGCAAGGACCCAGCATTTCTCAAATGGTACAGAGAAGCTGAGCTCATTCATGGAAGATGGGCAATGGCTGCAGTTCTAGGAATCTTTGTTGGTCAGGCATGGAGTGGAGTTCCATGGTTCGAGGCCGGAGCTGACCCTAACGCAATCGCTCCATTCTCGTTCGGTACTCTTCTAGGCACACAGTTGATTCTCATGGGATGGGTAGAGAGCAAGAGATGGGTTGATTTCTTCAACCCGGACTCACAGTCGGTCGAATGGGCCACTCCATGGTCTAAAACCGCGGAGAACTTCGTCAACTCAACCGGAGAACAAGGCTACCCCGGTGGAAAATTCTTCGATCCTCTGTCACTCGCTGGTACCATCGAAAACGGAGTCTACATTCCAGATACAGACAAGTTAGAGAGATTGAAACTCGCTGAGATTAAGCATGCTAGGCTTGCTATGTTAGCTATGCTGATTTTCTACTTTGAAGCTGGACAAGGGAAGACACCCCTCGGGGCTCTTGGCTTGTAA 783 0.4981 MAAATSGAVLNGLGSSFLSGGKRSQTLLATAIGSKVGVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFVNSTGEQGYPGGKFFDPLSLAGTIENGVYIPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4961 260 Pfam Chlorophyll A-B binding protein 72 248 IPR022796 -
Psa1g4961 260 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 1 260 - -
Psa1g4961 260 Gene3D Chlorophyll a/b binding protein domain 72 259 - -
Psa1g4961 260 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 260 IPR001344 GO:0009765|GO:0016020
Psa1g4961 260 SUPERFAMILY Chlorophyll a-b binding protein 69 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4961 Psa-Chr1 365706778 365709058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4961 1 260 Chloroplast and Mitochondria Gene Families AT1G15820 82.692 8.84e-155 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4961 K08917 - gmx:100500118 484.952