Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4959 ATGGGGTTTTTTCCCCTTTTTGTTCTTCAACTTATCACTTTTTCAGTTCTTGCTATAGCTCAAGAAGAACCTAAAGGGACCCCCAAAGATAATAGTGAAGCACAAGATAAACAACCTTCAAGTAATAAAAACAATTCAAATCTTTTATTATTAATTCTCAATGTGGTTCTTCTTCTTGCAATTATATTGCTATTGATTCTTTACTACAACACGTCAAAGAAACTCAATAGAATAGTGAAAGGGCACATTAATAACGTGTCTTATGAACAAGAGAAAGATGTTGAGACAAGTATTGAGAAGAGGATTGAGATAGGAGAAGGGACAACAATGATGACAGTGGAAGAGAGAAAGGAACTTATGTTTTTTAATGATGAGACAAAGTTTCAAATGGGAGAACTTCTTAGAGCTTCTGCTGAGGCATTAGGACATGGAATTATGGGGAATAGTTATAAGGCTATGTTGAGTAATGGACCTAACATTGTTGTTAAGAGGTTAAGGGACTTGAAACCTTTCACTAAGGAGGAGTTTGCTAAGATGGTGAAAATGATTTCTGATCTTAGGCATCCTAATTTGTTGCCTTTGCTTGCTTACTACCATTCAAGAGATGAGAAGCTTATGCTTTATAGATATGCACAGAATGGAAATCTTTTCTCCAAACTTCATGATGGAAGAGATGGAAACAGGATTCCATTCAATTGGAACTCAAGATTATCAGTGGCAAGAGGAGTTGCTAGAGCACTAGAGTACCTTCACCTCAACAACAAGATCCGTAACATAGTCCCTCATGGAAATTTGAAGTCATCAAATGTACTATTTGATGAAAACAATTCAATTCTTGTATCTGACTTTAGCCTTTCCTCCTTAATAGCACAACCAATTGCAGCTCAGCACATGGTTGTTTACAAATCACCTGAATATGGTTATGCAAGAAAAGTTACAATGCAATCAGATGTTTGGAGCTATGGATCACTCTTAATAGAAATCCTAACTGGAAAAGTTTCTCTCTGCTCAGCTCCGCAAGGGACTCATGGTGTGGATCTTTGTAGTTGGGTTCATAGAGCTGTGAGAGAAGAATGGACTGCTGAGATATTTGATAAAGAAATATCTTGTCAAAAGAGTGCTCTTCCGGGAATGTTAAGGTTGTTGCAGATAGCAATGAGATGCATCGAGAGGTTTCCAGAGAAACGTCCTGAGATGAAAGAGGTGGTTAGAGAAGTCGAGAAAATACAACAGATACACTTGATGTCTGAAGACGACGATGATGTTTCTTGTGATAGGTCTCTGACCGATGATTCCTTTTCAACTAGTAACTCGGGGATTTTTATCGGAGATGAAAGATAG 1341 0.3751 MGFFPLFVLQLITFSVLAIAQEEPKGTPKDNSEAQDKQPSSNKNNSNLLLLILNVVLLLAIILLLILYYNTSKKLNRIVKGHINNVSYEQEKDVETSIEKRIEIGEGTTMMTVEERKELMFFNDETKFQMGELLRASAEALGHGIMGNSYKAMLSNGPNIVVKRLRDLKPFTKEEFAKMVKMISDLRHPNLLPLLAYYHSRDEKLMLYRYAQNGNLFSKLHDGRDGNRIPFNWNSRLSVARGVARALEYLHLNNKIRNIVPHGNLKSSNVLFDENNSILVSDFSLSSLIAQPIAAQHMVVYKSPEYGYARKVTMQSDVWSYGSLLIEILTGKVSLCSAPQGTHGVDLCSWVHRAVREEWTAEIFDKEISCQKSALPGMLRLLQIAMRCIERFPEKRPEMKEVVREVEKIQQIHLMSEDDDDVSCDRSLTDDSFSTSNSGIFIGDER* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4959 446 Gene3D Transferase(Phosphotransferase) domain 1 211 431 - -
Psa1g4959 446 Pfam Protein tyrosine and serine/threonine kinase 139 405 IPR001245 GO:0004672|GO:0006468
Psa1g4959 446 ProSiteProfiles Protein kinase domain profile. 135 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4959 446 PANTHER OS05G0588300 PROTEIN 25 441 - -
Psa1g4959 446 PANTHER RECEPTOR-LIKE KINASE 25 441 - -
Psa1g4959 446 Gene3D Phosphorylase Kinase; domain 1 103 210 - -
Psa1g4959 446 SUPERFAMILY Protein kinase-like (PK-like) 139 413 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4959 Psa-Chr1 365650999 365652828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4959 99 410 Receptor kinase-like Gene Family AT2G36570 40.426 2.35e-74 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa1g4959 PK_Tyr_Ser-Thr 4.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4959 - - mtr:MTR_2g008740 722.62