Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4954 ATGTCATCTTCTTCTTCTTCGATTCTTGTAATCCAAATTCCAACAGCAACAACGGTTTCTGCTGTGAAGCAGATGGCGCTTTTCAAACCTCTCAATCTGAATTTTCAGAAAGGCAGAGGCATCCAACGGCAGTTGAATCACCGCGCTCACCGCCACAGCTCTGTTAAGCCATTGCGGTTACGGTGCTCAACTCCTTCCAGTGGTGGGAACCTCCTCCATGATGATGCGATTGTTCTCCATGTTCGGGGAATGATGTGTGAGGGATGTGCCTCTAGCGTCAAGAAAATTCTAGAAACTCAACCAGAAGTGTTATCTGCTACTGTGAATCTAGCATCAGAGACAGCACTAGTTTCACCTTTATTATCGGAAGAAAAAACTCCACCAAATTGGCAAAAGAAGTTAGGAGAAACACTTGCAAACCATTTAACTACATGTGGTTTTACTACTACCCTTAGAGGTCAGGATGATAGTGACTAA 477 0.4403 MSSSSSSILVIQIPTATTVSAVKQMALFKPLNLNFQKGRGIQRQLNHRAHRHSSVKPLRLRCSTPSSGGNLLHDDAIVLHVRGMMCEGCASSVKKILETQPEVLSATVNLASETALVSPLLSEEKTPPNWQKKLGETLANHLTTCGFTTTLRGQDDSD* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4954 158 Pfam Heavy-metal-associated domain 79 136 IPR006121 GO:0046872
Psa1g4954 158 ProSitePatterns Heavy-metal-associated domain. 81 110 IPR017969 GO:0046872
Psa1g4954 158 CDD HMA 78 117 IPR006121 GO:0046872
Psa1g4954 158 Gene3D - 75 154 - -
Psa1g4954 158 ProSiteProfiles Heavy-metal-associated domain profile. 76 151 IPR006121 GO:0046872
Psa1g4954 158 PANTHER ATP7, ISOFORM B 67 149 - -
Psa1g4954 158 PANTHER COPPER-TRANSPORTING ATPASE PAA1, CHLOROPLASTIC 67 149 - -
Psa1g4954 158 SUPERFAMILY HMA, heavy metal-associated domain 77 122 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4954 Psa-Chr1 365582781 365585819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4954 66 152 Primary Pumps ATPases AT4G33520 59.770 3.32e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4954 - K17686 mtr:MTR_7g116990 182.57