Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4953 ATGTCGTGGTTTGGATATCATTCTTTGCCTTCCTTAGGCGGTTCACTTTTTCTTTTTGACCGGAAGGTTTTGAGATACTTCAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTAAAAGAAGCTCATGAAAAATTAAAGGTGGGAAGTGTTGATGTGTTACATTGTTACTACGCACATGGAGAAGAAAACGAAAATTTTCAAAGGCGGAGCTATTGGATGCTTGAACAGGATACACACATAGTATTTGTCCACTACTTGGAAGTTAAGGGTAACAAGTCAAATACCGGAGGGAACACTGATAGCGATGGGGTCGTATCAGATTCTCAGAAGGTCAATTCTCCGTCGTCTGGCTTTCCCACAAGTTATAGTAGTGCGCCTTCACTGAGTACAGGTTCCATGAGCCCAACTAGCAGCATGACATCTTTACGTGAAGATGCCGATTCAGGTGATCATGGACAGTCATCAGTTTCTGGAACGGAATATATCCCACATTTTGACAGGAATAAGTTTCGGGGAAATGATGCTACTTGTATTGATGGCCTGAAAGCACATGGCCTGACATCATGGGACACAGTCTTGCATGCTGATCCTTCTCTCGTATCGTTTCCTTCCATCCCATCTAGTTCACTGGCAAACATCCTTGACCAAGAACATAACATCTTGGGTGACTTTTCAATGAGCAGAAGTGATCTCACTATTGGAGCCGGGAGCTCTCAGCCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAACCCAGGACACATGCCAACCTTTACCCAATCGTTGAGTTTGGAATTTGAATCTGATTATGGAACTGGTTTACTAGGGAATGAAGATCATAATAAAAGTTCTGAAATTGATCCTGTCATGTTCAGTTTTCACGGTGAGCCAAAAGTGAAGCTTGCACAACAGCAAGATGACCTCAAGTCCAATTCTGCAAGTGAAGTTCCTAGCGAAGAAACTGTTAGCTATCCCTTATCTGTGAGGCGCACATTATTGGATAGGGATGAGAGCTTGAGGAAGGTTGATAGCTTCAATCGATGGATTACTAAAGCTCTTGGTGAGGTGGATAATTTGAATATGCAGTCCTCAAGTGGTATTTCATGGAGTACAGATGAATGTGGGCATGTGATAGATGATACCTCACTGAGCCCATCGCTGTCTCAGGACCAACTATATAGCATAAATGATTTTTCACCTAAATGGGCTTGTGCTGAGTCAGACATTGAGGTGTTGATTATTGGATCATTTTTGAAAAGTCAATCAGACGCGACAACCTGTAACTGGTCATGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTTGTAGCTAATGGAATTCTGTGCTGTCAAGCTCCTCCTCATAAGGTTGGCCGGGTCCCTTTCTATGTAACATGTTCCAATAGTTCAGCTGGCATGCTGCTTCATTTGCGACTGGAGGAGTTTCTTTCTTTAAAACCAGTGCACCCTTCAAATCAAACCTTTGAGGGCGGTGCAGAGAAAATGAACTTAATTCCTAAGCTTATTTCGCTAAGAGAGGAAGAAGAATATTCAAGTAAGGAAGAGCAGTCTCTGTTTCACAAGCAGGTTAAAGAGAAACTGTACTCGTGGCTGCTTCATAAGGTAGCCGAGAGTGGTAAAGGGCCAAATGTGTTAGATAAGGATGGGCAGGGCGTGCTACATTTAGCAGCTGTTCTTGGTTATGACTGGGCAATAACCCCAATTTTAACTGCTGGAGTTAGTATCAACTTCCGTGATGTGAACGGATGGACAGCTTTGCATTGGGCAGCATCTTGTGGCAGAGAGCGGACAGTTGCTGTCCTTGTATCCATGGGTGCAGATTGTGGTGCATTGACGGATCCATCTCCAGAGTTTCCTTCAGTGGATGATCAACAAAAAGGTGGTAAGCAAGAAGTTCCAGGAATGAAAACAGATTCTCTAACCGCTGTCCGCAATGCTACACAAGCTGCCGATCGCATACATCAAGTATTCAGAATGCAGTCCTTTCAGAGGAAGCAGTTAACTCAGTATGAGGATGATGAGTTTGGTTTGTTAGATCAGAGGGCTCTTTCCCTACTAACTTCTAAGTCGTGCAAATCAGGACAAGGAGATGGTTTATTCAATACTGCTGCAACTCAAATACAGAAGAAGTTTCGTGGTTGGAAGAAGAGGAAAGAGTTCTTGATCATTCGCCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACTGTCATCTGGTCTGTGGGAATCCTGGAGAAGGTTATATTACGCTGGAGACGCAAGGGTAGTGGTCTCCGTGGGTTTCGACCAGAAACCCTTAACAAATCCCCCACTCAACAAAATGATTCTCCGAAAGAGGATGATTATGATTATCTAAAGGAAGGACGAAAGCAAAAAGAGGAAAAGATCCAAAAGGCCCTTTCTAGGGTGAAGTCCATGGTTCAGTATCCGGAGGCACGGGCTCAATACCGGCGCATGCTAAATGTTGTCGAAGACTTCCGTCAAAAGAAGGATTCTAATATGGGTTTGATAAGTTCTGAAGAGACAGTTGATGGTGTAGAGGATTTGATCGATATTGATATGCTTTTAGATGATGATAATTTCATTCCCATAGCATTTGATTGA 2670 0.4307 MSWFGYHSLPSLGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEQDTHIVFVHYLEVKGNKSNTGGNTDSDGVVSDSQKVNSPSSGFPTSYSSAPSLSTGSMSPTSSMTSLREDADSGDHGQSSVSGTEYIPHFDRNKFRGNDATCIDGLKAHGLTSWDTVLHADPSLVSFPSIPSSSLANILDQEHNILGDFSMSRSDLTIGAGSSQPLQSNWQIPFEDNPGHMPTFTQSLSLEFESDYGTGLLGNEDHNKSSEIDPVMFSFHGEPKVKLAQQQDDLKSNSASEVPSEETVSYPLSVRRTLLDRDESLRKVDSFNRWITKALGEVDNLNMQSSSGISWSTDECGHVIDDTSLSPSLSQDQLYSINDFSPKWACAESDIEVLIIGSFLKSQSDATTCNWSCMFGEVEVPAEVVANGILCCQAPPHKVGRVPFYVTCSNSSAGMLLHLRLEEFLSLKPVHPSNQTFEGGAEKMNLIPKLISLREEEEYSSKEEQSLFHKQVKEKLYSWLLHKVAESGKGPNVLDKDGQGVLHLAAVLGYDWAITPILTAGVSINFRDVNGWTALHWAASCGRERTVAVLVSMGADCGALTDPSPEFPSVDDQQKGGKQEVPGMKTDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQYEDDEFGLLDQRALSLLTSKSCKSGQGDGLFNTAATQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKTVIWSVGILEKVILRWRRKGSGLRGFRPETLNKSPTQQNDSPKEDDYDYLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRMLNVVEDFRQKKDSNMGLISSEETVDGVEDLIDIDMLLDDDNFIPIAFD* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4953 889 Pfam CG-1 domain 13 92 IPR005559 GO:0003677
Psa1g4953 889 ProSiteProfiles Ankyrin repeat region circular profile. 594 620 - -
Psa1g4953 889 SUPERFAMILY E set domains 401 475 IPR014756 -
Psa1g4953 889 ProSiteProfiles Ankyrin repeat profile. 561 593 IPR002110 GO:0005515
Psa1g4953 889 ProSiteProfiles Ankyrin repeat profile. 594 626 IPR002110 GO:0005515
Psa1g4953 889 SMART CG_1_2 1 94 IPR005559 GO:0003677
Psa1g4953 889 MobiDBLite consensus disorder prediction 783 803 - -
Psa1g4953 889 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 650 889 - -
Psa1g4953 889 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 153 476 - -
Psa1g4953 889 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 155 - -
Psa1g4953 889 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 474 633 - -
Psa1g4953 889 ProSiteProfiles CG-1 DNA-binding domain profile. 1 99 IPR005559 GO:0003677
Psa1g4953 889 MobiDBLite consensus disorder prediction 98 165 - -
Psa1g4953 889 Pfam IPT/TIG domain 401 474 IPR002909 -
Psa1g4953 889 Gene3D - 505 630 IPR036770 -
Psa1g4953 889 Pfam IQ calmodulin-binding motif 716 733 IPR000048 GO:0005515
Psa1g4953 889 Pfam IQ calmodulin-binding motif 738 757 IPR000048 GO:0005515
Psa1g4953 889 SMART ANK_2a 561 590 IPR002110 GO:0005515
Psa1g4953 889 SMART ANK_2a 594 623 IPR002110 GO:0005515
Psa1g4953 889 SMART iq_5 735 757 IPR000048 GO:0005515
Psa1g4953 889 SMART iq_5 712 734 IPR000048 GO:0005515
Psa1g4953 889 MobiDBLite consensus disorder prediction 98 148 - -
Psa1g4953 889 Gene3D Immunoglobulins 394 480 IPR013783 -
Psa1g4953 889 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 153 476 - -
Psa1g4953 889 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 13 155 - -
Psa1g4953 889 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 650 889 - -
Psa1g4953 889 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 474 633 - -
Psa1g4953 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 763 IPR027417 -
Psa1g4953 889 Pfam Ankyrin repeats (3 copies) 540 622 IPR002110 GO:0005515
Psa1g4953 889 ProSiteProfiles IQ motif profile. 736 760 IPR000048 GO:0005515
Psa1g4953 889 SUPERFAMILY Ankyrin repeat 545 624 IPR036770 -
Psa1g4953 889 ProSiteProfiles IQ motif profile. 714 742 IPR000048 GO:0005515
Psa1g4953 889 Gene3D - 713 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4953 Psa-Chr1 365556895 365566128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4953 14 855 CAMTA Transcription Factor Family AT5G64220 45.935 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Psa1g4953 Ank_2 1.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4953 K21596 - gmx:100818124 1285.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4953 1 365556895 365566128 Psa1g4953 1 365556895 365566128 ECH