Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4946 ATGAAGGAGGAAGAACAATCAACGGTGAAGATGGAGTGGTTATCTTCCATTGATTCAACCACTCTCTCACATTCTGAACTTCACGCGCTTTCTCTCTCTTCCCTCTCCGCTTTCGACCTCAAATCCACGCGCGATATCATCACTCCCAAAATCGATCCTTCAACCTTCAACCACAGCGCCGGTTCCCACCGTCAAACCTACTCTCGACCTCGCCGTCTATGTCGCGTTGCGCCGCTTCTTCCTACTCCCGCCCTCCCCTCCGACCACCGCATCATCGTCGATTACCTCAAGCAGTTTATCAGAGAAGATCCGAAGTTCGACATGGTGGAGCTTCTTCCGCCGACAGTTCCTTCGCCGCCGGTTTTGTTTACCGGTGAAGTGAGGAAGAGAAAGAGAGGGAGGAAACCTAAAGTGAATACGCATTTGGATGAGAGAGGGATGGGGATTGTGAACAAGAATGGCGTTGCTATTGATCTTGCTGCGTTGTTTAATGTGGAACATCCGTTTGCGGCGGAGCTGGCGAGACGGACGGAGGGAATGAACAGTGAGGAAGAGTTGTTAGGGTTTTTGAGTGATTTGGTTGGTCAATGGGGAAGTAGGAGGAGGAAGAGGAGGATCGTTGATGCTGCGGATTTTGGAGACGTGCTGCCTCTTGATTGGAAGCTTCTTCTTAGTTTGAAGAGAAAAGATGGTCGAGCTTGGATCTATTGCCGCAGATATATAAGCCCTAGTGGACAGCAGTTTGTGTCTTGCAAAGAAGTTTCTTCCTATTTGCAGTCTCGCTTTGGCCACTCTGATTTACAGTTACAAATCAGTCACAAGAGTGAAAATATACTTCAGGAACAGAGAGTTACTACTGATAATTCTGTAGGTGTTGCTCGCGAGGAGCATGATCAACGGCAGATTGTTGCCACTAACTCAGATGTGTCTGGTTTGTCTGTCTCTAATGAACGATTGAAAGAAGTGTCCTTGTTGGAGACGGAGAACCTTGCAGATGTGCAAATACATGATTTGTTTGAATGTCACAAGTGCAGCATGACCTTTGATGAGAAGGATGCATATTTGCAGCACCTGTTGTCTATTCATCAAAGGACAACGAAACGGTATCGAGTTGGTGCATCTGTTTCAGATGGAGTTATAATTAAAGATGGGAAATTTGAGTGCCAGTTTTGTCATAAAGTGTTTTTGGAAAGGCGTCGCTACAATAGTCATGTTGGGATACATGTTCGGAATTATGTGAGGAGAGCTGAACATTTGCCGAGTCAGCCTAATGTCATGAATGCAGACAAGTCTCCCGTCACGGATGAGATGCCCTCTAGGATCTCTAAGATGGATGCCCTCGTCGAGATTGCTCAAAACTCTATAATGGAGGATTCTGTCATGGAACCAGATTGTTCTTCTAGACTAAATAGGATCCCTGTTTCAGGAATTGCGGTTGGTGACTTAGATGAAAACATAAAGGTCGAGTTTCCGATTAATGAACAACAAATGGAAGAGAGCTTGATTGGCAAAAATGTAGTTCACAATTCAAATCAGCAAGGTAGTCCTCGTTTACCCATGGATGGAACAGTAGAAAAGATTGACTACAATAACCAAGTTATTGATGCAAAGATGTTTAGTTTTCAAGATAACATGGGCTTGTTATCTGTAAATAAGAAAAATGTTGATGCACCTGATACTTCTAAAGGAAAAGGTGATGTTCCGCTGACTGTTGAGGGGTTTGATCATTCTGGGATTAATCTGCAAGGAGTTTCTCAAAGCCTGCTGTTTCCTTCATCTGGCAATCACATGAAACCTAAGAGTGAAAATTCTGGTTGCATCAATACCCAAGGGGATCTTAAACTTGATGAAGACAATAGTAATAAAAGTGACTTGAAAATTAGTTTAGGTGGCTGCAAAGATGCACCTGGTGTTGCTAATGTTCAAGTGACAGCAATTTCAACTTCTAAAGAAAATGTGATCCAATCTAGGGTTTCTAACACCTCTGTATCCCCAGAACAATCTTTGTATTCTTTTTCTGCATTCAGCTCAGACAAGGGGTTCCAGGAATTGAGGTTAGAAGATATAGGTTCTCTCGAGTACGATTTTGCAAGTGTTCAAGGCTCTCTTGATGTGTCAGCCGAGTTAGCAAATCACCTAGTGGTGCAAGGGACATGTGTATCCTCAGCTCAGTCTGCATCACAAGAAGTTATGTTAAATGTGGATGGCAATAATCTACTCACAACGGCATGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAATCAGATTCTGTTGGATTCATGTGTCCAGTTTGCAAGGCAAAAATATCTGGTCAAATCAATATGTTGGACAGCGGTTCACCAAATGCTGGCCATCTTTAG 2382 0.4345 MKEEEQSTVKMEWLSSIDSTTLSHSELHALSLSSLSAFDLKSTRDIITPKIDPSTFNHSAGSHRQTYSRPRRLCRVAPLLPTPALPSDHRIIVDYLKQFIREDPKFDMVELLPPTVPSPPVLFTGEVRKRKRGRKPKVNTHLDERGMGIVNKNGVAIDLAALFNVEHPFAAELARRTEGMNSEEELLGFLSDLVGQWGSRRRKRRIVDAADFGDVLPLDWKLLLSLKRKDGRAWIYCRRYISPSGQQFVSCKEVSSYLQSRFGHSDLQLQISHKSENILQEQRVTTDNSVGVAREEHDQRQIVATNSDVSGLSVSNERLKEVSLLETENLADVQIHDLFECHKCSMTFDEKDAYLQHLLSIHQRTTKRYRVGASVSDGVIIKDGKFECQFCHKVFLERRRYNSHVGIHVRNYVRRAEHLPSQPNVMNADKSPVTDEMPSRISKMDALVEIAQNSIMEDSVMEPDCSSRLNRIPVSGIAVGDLDENIKVEFPINEQQMEESLIGKNVVHNSNQQGSPRLPMDGTVEKIDYNNQVIDAKMFSFQDNMGLLSVNKKNVDAPDTSKGKGDVPLTVEGFDHSGINLQGVSQSLLFPSSGNHMKPKSENSGCINTQGDLKLDEDNSNKSDLKISLGGCKDAPGVANVQVTAISTSKENVIQSRVSNTSVSPEQSLYSFSAFSSDKGFQELRLEDIGSLEYDFASVQGSLDVSAELANHLVVQGTCVSSAQSASQEVMLNVDGNNLLTTACVWCGIEFNHDAVNSEIQSDSVGFMCPVCKAKISGQINMLDSGSPNAGHL* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4946 793 SUPERFAMILY DNA-binding domain 212 265 IPR016177 GO:0003677
Psa1g4946 793 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 6 781 - -
Psa1g4946 793 Gene3D Classic Zinc Finger 313 413 - -
Psa1g4946 793 SMART c2h2final6 386 408 IPR013087 -
Psa1g4946 793 SMART c2h2final6 339 362 IPR013087 -
Psa1g4946 793 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 206 278 IPR001739 GO:0003677
Psa1g4946 793 ProSiteProfiles Zinc finger C2H2 type domain profile. 386 413 IPR013087 -
Psa1g4946 793 ProSitePatterns Zinc finger C2H2 type domain signature. 388 408 IPR013087 -
Psa1g4946 793 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 6 781 IPR037472 -
Psa1g4946 793 Gene3D - 197 304 - -
Psa1g4946 793 ProSiteProfiles Zinc finger C2H2 type domain profile. 339 367 IPR013087 -
Psa1g4946 793 ProSitePatterns Zinc finger C2H2 type domain signature. 341 362 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4946 Psa-Chr1 365278357 365284613 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa1g4946 MBD 0.00025 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4946 - - gmx:100526917 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4946 1 365278357 365284613 Psa1g4946 1 365278357 365284613 ECH