LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g4936	ATGAACACCACCGATTCAGAAGACTTGAAGAAACGGATGGTCAGTTATCTCTTCAGCGACCATTCCGTCCATCAACTCCGATCCATTGCCTCTTCTCCCGATTCCCATCTTCACTTTCCTCTCTACGTCGACTTCGCAGAGTTGATGGATTATGATCCTCGCATCGCTCATCTAATCTTCTCCCAATCCAACACCTACCTTCAACTATTCGACGAGGCTGCTCTTTTAGCTCATAGAATTGTGTTAGGAGAAATGGCTGCTGATGAAAAGAATAAAGTGGTTGAGAAAAAATTCATTCATGTTCGCATTAATGTCGGTGGTTCTCCTCTTGAATGCCCTGAGACTTTTCCGAGCATAGGGCGTGTACGGGTGCAGCACCGAGGGATTCTACTCACTGTCAAAGGGATAGTAATCAGGTCTGGAGCAATCAAGATGCATGAAGGGGAGAGGAAGTACATGTGCCACAAATGCAAAAACAGCTTCACAGTTCATCCTGAGGTGGAAGCTCGAAACTTTATATCATTACCTTCAATGTGCCCAATTCAGCAGAAGTCGAAGCCCTGTGGTGGTTCAAAATTCCAGTATGTAGAGAATACTATTGTGTGCCATGATTATCAGGAGATAAAAGTCCAAGAAAGTACAAAAGTGCTAGGTGTTGGAGCGATTCCTCGTTCAATTCTCGTCATCTTGAAGGATGACCTTGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACCGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAGGATGTGCGTTGTGACCTTGATCCTGTATTAATAGCCAACAATGTAAGGAGAATCAATGAATTGAAGTCAGAAATTGATATTTCTGATGTCATGGTTATGAAATTCAAGCAGTTTTGGAATCAATTCAAAGATGCACCTTTAAAAGGAAGGAATGCTATTCTACGAGGAATCTGCCCTCAAATATTTGGCCTTTTCACTGTCAAGCTGGCGGTTGCATTAACATTGATCGGAGGTGTGCAACACGTCGATGCTTCTGGAACAAGGGTAAGGGGGGAGTCCCACTTACTCTTGGTCGGTGATCCTGGCACTGGTAAATCACAGTTTCTGAAATTTGCTGCAAAACTGAGCAACCGATCTGTTATTACAACTGGGTTGGGAAGCACTAGTGCAGGATTGACTGTTACTGCCGTGAAAGATGGGGGTGAGTGGATGTTGGAAGCCGGGGCCCTTGTCTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACCCTCAGCACCAAAACAACAGTATTTGGCGCCACAAATCCTAAGGGACATTATGATCCTGACCAACCTCTGTCTGTCAATACAACCCTCTCTGGTCCCTTGTTAAGCAGGTTTGATATAGTCCTAGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCGGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACCAGATAGAACATCCAATGATGAAGATCTAGCAAATGTCTGGCCTCTTTCTACTCTTAAGAGATATGTACACTATTTAAAAGAAAAATTCAGACCAGTCCTTACGAGAGAGGCCGAAGCAGTTATATCCAGCTATTATCAACTTCAAAGGAGATCTGCCACCGATAATGCAGCTAGAACAACTGTCCGCATGCTTGAAAGTTTGATTCGCCTTGCTCAAGCTCATGCACGGCTGATGTTCAGAAACGAGGTGACTCGGCTAGATGCCATCACAGCTATTTTATGTATAGAATCTTCCATGACCACCTCAGCTATTGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTCACTGACAACCCTGATCAGGAATATGCAAAGCAAGAAAGGTTGATCCTAGAAAAACTGGGATGCAAAGACAACTTTTCTGATATGAATATCATGGAAGACTGA	2001	0.4358	MNTTDSEDLKKRMVSYLFSDHSVHQLRSIASSPDSHLHFPLYVDFAELMDYDPRIAHLIFSQSNTYLQLFDEAALLAHRIVLGEMAADEKNKVVEKKFIHVRINVGGSPLECPETFPSIGRVRVQHRGILLTVKGIVIRSGAIKMHEGERKYMCHKCKNSFTVHPEVEARNFISLPSMCPIQQKSKPCGGSKFQYVENTIVCHDYQEIKVQESTKVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNVRRINELKSEIDISDVMVMKFKQFWNQFKDAPLKGRNAILRGICPQIFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTKTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRTSNDEDLANVWPLSTLKRYVHYLKEKFRPVLTREAEAVISSYYQLQRRSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQERLILEKLGCKDNFSDMNIMED*	667

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g4936	666	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	318	625	IPR027417	-
	Psa1g4936	666	Pfam	MCM AAA-lid domain	534	615	IPR041562	-
	Psa1g4936	666	Gene3D	-	146	203	-	-
	Psa1g4936	666	Gene3D	-	283	621	IPR027417	-
	Psa1g4936	666	SUPERFAMILY	Nucleic acid-binding proteins	38	258	IPR012340	-
	Psa1g4936	666	CDD	MCM9	311	615	-	-
	Psa1g4936	666	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	28	655	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Psa1g4936	666	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	349	364	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Psa1g4936	666	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	407	421	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Psa1g4936	666	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	435	448	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Psa1g4936	666	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	485	493	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Psa1g4936	666	Pfam	MCM OB domain	122	251	IPR033762	-
	Psa1g4936	666	Pfam	MCM P-loop domain	310	513	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Psa1g4936	666	Gene3D	-	122	251	IPR012340	-
	Psa1g4936	666	SMART	mcm	115	617	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Psa1g4936	666	SMART	AAA_5	350	499	IPR003593	-
	Psa1g4936	666	ProSiteProfiles	MCM family domain profile.	308	511	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Psa1g4936	666	PANTHER	DNA HELICASE MCM9	28	655	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g4936	Psa-Chr1	364924592	364938390	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa1g4936	13	640	Core DNA Replication Machinery Family	AT2G14050	74.245	0.0	974

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g4936	K10738		-	gmx:100776255	1102.81