Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4915 ATGGAACATCATCACAGAAAACTGATCCCAGAGTTATGCGAGTTGATATGCCATGGAATAGACTCTGTATCTAAATGTTCACTCAACAATGATTGCGCTAATTGCTTCAGAAACTGTCTCAAAACCAATCCTCAATACCCTAATTACTATTATCCACCACCACCGTCACCGCCACCGCCACCGCCACAACAAGAATTTCCATTATACTCCTCATCCAATCAAAACCAGCACAAAATCGCCAATTACTTCATCATCACTCTTTCTATTCTTGCTTTTATTTTCTTCCTTGTTTGTATCCGTGCAATTTATGTCAATTTTAGGTCAAGAAGAAGGATGCGAAGGTTAAGGGCAGTGGCAAGGACAAGAGCACCACCACCACCATCCTCATCATCATTATCATCAAGGATTCAACAAATTCAGGTGATGAATTTTGATGATGAACAACAACATGATTCTATTGTGGATCATCCAATTTGGTATATTCGAACTCAAGGTCTTCGACAATCTGTTATTAATGCAATTAGTGTTTGTAAGTATAAGAAAGGTGAAGGATTGATTGAAGGAACTGAATGTTCTGTTTGTTTGAGTGAGTTTGAAGAAGATGAGAGTCTTAGGCTTTTACCTAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGATCTCATACTAATTGTCCTATGTGTAGAGCTCCAATTGTTAATACTAACCCTACAATTGCGAGGGTTCAGTCTTTGGAATCTATTGTTGTTGATTCTCATTCAACTTCATTGGATGATAGACATGTTGATGAAAATAGTGGTGAATCTGAATCCAATTTAGGGTTTCAAAATAGGGTTCATGATTATGAGTTGAGGAATAGGGTAGAAGGGGAAGGAGGGCAATTGGAGGTTTGTGAAAACGGAAGACCAGTTGTCGATGCGGTTAGTGGCAGTATTCGGCCTAGGAGATCGGTTTCTATGGATGATTCTTTTGTTGTAGGCATCAATAATGTTGTTGCAACTGTTCTGTCAAAGGAATCTAATGGTGATGAAGATAGTGTTTCGGTTAATGGAAGTGAGAATTTAGCAACTACATCCAAAGGTGGTAGTAGTAGCTTTTCTTTTAGGTCAACAAGATATTTGCAGGGTGTTGCTAGTCCAATGAAGAGATCAAGTTCATATAATGGGAAATTTCTTCTGTCTTGGTATAGTCGCAATCAGAAAAAGCCAAATGCTATTCTGAGAAGCTTTTAA 1245 0.3815 MEHHHRKLIPELCELICHGIDSVSKCSLNNDCANCFRNCLKTNPQYPNYYYPPPPSPPPPPPQQEFPLYSSSNQNQHKIANYFIITLSILAFIFFLVCIRAIYVNFRSRRRMRRLRAVARTRAPPPPSSSSLSSRIQQIQVMNFDDEQQHDSIVDHPIWYIRTQGLRQSVINAISVCKYKKGEGLIEGTECSVCLSEFEEDESLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVNTNPTIARVQSLESIVVDSHSTSLDDRHVDENSGESESNLGFQNRVHDYELRNRVEGEGGQLEVCENGRPVVDAVSGSIRPRRSVSMDDSFVVGINNVVATVLSKESNGDEDSVSVNGSENLATTSKGGSSSFSFRSTRYLQGVASPMKRSSSYNGKFLLSWYSRNQKKPNAILRSF* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4915 414 CDD RING-H2_PA-TM-RING 190 233 - -
Psa1g4915 414 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 405 IPR044675 -
Psa1g4915 414 ProSiteProfiles Zinc finger RING-type profile. 191 233 IPR001841 -
Psa1g4915 414 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 405 - -
Psa1g4915 414 SMART ring_2 191 232 IPR001841 -
Psa1g4915 414 Pfam Ring finger domain 190 233 IPR001841 -
Psa1g4915 414 SUPERFAMILY RING/U-box 185 239 - -
Psa1g4915 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 241 IPR013083 -
Psa1g4915 414 MobiDBLite consensus disorder prediction 344 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4915 Psa-Chr1 364266272 364284200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4915 144 306 C3H Transcription Factor Family AT1G72220 47.429 2.34e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4915 - - lja:Lj6g3v2193690.1 337.806