Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4912 ATGAGTTCCGAGGGTGTCGGGGAAGATTGCCTTGCTTGGGCGGCAAGAGACGCATCTGGAGTTTTGTCGCCTTACAAATTCAATCGCAGGGCTCTTGGGAGTGAAGATGTTTATGTCAAAATTACACACTGTGGTGTTTGTTATGCTGATGTAATTTGGACAAGGAATAAACACAGGGATTCAAAGTATCCTGTTGTGCCGGGACATGAAATTGCTGGGGTTGTGGCAAAGGTTGGTCCTAATGTCCAACGTTTCAAGGTTGGTGACCATGTTGGAGTGGGGACTTACGTCAACTCATGCAGGGAGTGTGAGTATTGTAACGACAGACTAGAAGTTCATTGTGTCAAGGGATCGGTTTTCACATTTAATGGTGTTGATTTTGATGGTACTGTTACAAAAGGAGGATACTCCACTTCCATTGTAGTACATGAAAGGTATTGCTTCTTGATACCTAAAAGCTACCCTTTAGCTTCAGCAGGTCCTTTGCTTTGTGCCGGCATCACAGTTTATTCTCCCATGATGCGTCATAAGATGAATCAACCTGGTAAGTCTCTTGGAGTGATTGGTCTTGGTGGCCTCGGTCATATGGCGGTAAAATTTGGGAAGGCATTTGGTTTGCGTGTGACGGTTTTCAGCACTAGTGTGTCCAAGAAAGAGGAGGCGCTGAACCGACTTGGCGCGGACAATTTTGTTGTTTCATCTAATCAAGAAGAGATGAAGGCATTGGCTAAATCATTGGATTTTATCGTTGACACGGCATCAGGTGATCATCCGTTTGATCCTTACATGTCACTCTTGAAGGTATCTGGTGTTCTGGTCTTAGTTGGGTTCCCAAGTGAAGTCAAATTCAGCCCTGCAAGCCTTAATTTAGGATCAAAAACTGTTTCCGGAAGTATTACAGGTGGTACTAAAGAGATACAGGAGATGATTGACTTCTGTGCTGCAAACGGGGTTCACCCAGATATAGAACTGATTCCAATTGGATACTCGAACGAAGCTCTTGAAAGAGTCATAAATAAGGACGTGCAATATCGGTTTGTGATAGACATTGGAAACTCTCTTAAGTTGAATTAG 1074 0.4367 MSSEGVGEDCLAWAARDASGVLSPYKFNRRALGSEDVYVKITHCGVCYADVIWTRNKHRDSKYPVVPGHEIAGVVAKVGPNVQRFKVGDHVGVGTYVNSCRECEYCNDRLEVHCVKGSVFTFNGVDFDGTVTKGGYSTSIVVHERYCFLIPKSYPLASAGPLLCAGITVYSPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLRVTVFSTSVSKKEEALNRLGADNFVVSSNQEEMKALAKSLDFIVDTASGDHPFDPYMSLLKVSGVLVLVGFPSEVKFSPASLNLGSKTVSGSITGGTKEIQEMIDFCAANGVHPDIELIPIGYSNEALERVINKDVQYRFVIDIGNSLKLN* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4912 357 Pfam Alcohol dehydrogenase GroES-like domain 35 148 IPR013154 -
Psa1g4912 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Psa1g4912 357 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 185 212 IPR029752 -
Psa1g4912 357 Gene3D - 13 350 - -
Psa1g4912 357 SUPERFAMILY GroES-like 14 183 IPR011032 -
Psa1g4912 357 CDD CAD1 12 349 - -
Psa1g4912 357 PANTHER ALDEHYDE REDUCTASE 2 354 - -
Psa1g4912 357 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491
Psa1g4912 357 Pfam Zinc-binding dehydrogenase 192 314 IPR013149 -
Psa1g4912 357 PANTHER - 2 354 - -
Psa1g4912 357 Gene3D - 165 320 - -
Psa1g4912 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4912 Psa-Chr1 364220515 364223269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4912 2 355 Monolignol Biosynthesis Gene Families AT1G72680 75.141 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4912 K00083 - gmx:100807617 632.098