Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4906 ATGGCAACTTCTCATTTTTCAACTCATCCTAATTCCCTGAGGGTTCCAAATCTCATTGGGGGCAAGTTTGTTGAGTCAAAATCATTGACTTTCATAGATGTTATAAACCCTGCAACACAAGACGTTGTTTCACAAGTTCCTTTAACTACAAATGAAGAGTTTAAAGCTGCAGTGGCTGCAGCAAAGAAGGCATTTCCTTCATGGCGTAACACTCCGGTCACGAAACGCCAACGTGTTATGTTGAAGTTCCAGGAGCTTATACGCAGAGATATGGATAAACTTGCCACCAGTGTGACCACCGAACAAGGAAAGACGTTAAAGGACGCACAAGGCGATGTCTTCCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCGACACTACAGATGGGAGAGTATGTTTCCAATGTGGCAAATGGAATTGATACTTTCAGCGTTAAAGAACCAATTGGTGTTTGTGCCGGTATCTGTCCTTTTAACTTTCCTGCGATGATTCCCCTCTGGATGTTCCCAGTGGCGGTTACCTGTGGCAATACCTTCATTCTGAAACCATCAGAGAAAGATCCAGGTGCTTCTATGCTTCTTGCACAATTGGCAATGGAGGCTGGTTTACCTGAGGGTGTCTTAAGTATAGTTCATGGAGCCCACGATACTGTGAATGCTATCTGTGATCATGATGATATCAAAGCTATATCGTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATGCAAGAGCAGCAGCTAAAGGGAAGCGTGTTCAGTCTAATATGGGGGCCAAAAATCATGCAATTGTCATGCCAGATGCAAGTGTTGATGCTACCATAAATGCTTTAATTGCTGCGGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTTTAAGCACGGTTGTTTTTGTCGGTGGCTCAAAACCATGGGAAAGTATACTCGTAGAGCGTGCCAAAGCTCTTAAAGTAAATGCTGGAACAGAACCTGATGCAGACCTTGGTCCAGTCATTAGCATACAGGCAAAGGAGCGAATACACAAATTAATTCAATCTGGATTTGAAAGTGGGGCCAGACTATTGCTTGATGGAAGAAGTATAGTGGTCCCCGGATATGAATCCGGCAATTTTATTGGCCCAACCATCTTAGCAGATGTTAGTTCCGACATGGAGTGCTACAAGGAGGAGATTTTTGGCCCGGTTCTACTTCTCACGGAGGCTGATAGCTTGGATGAGGCCATAAACTTTGTCAATGAAAACAAGTATGGAAATGGTGCTACCATATTCACTAGTTCTGGTGTTGCTGCTAGGAAATTTCAGACCGAAATCGAGGCAGGCCAAGTGGGCATCAATGTTCCTATTCCTGTTCCTTTGCCATTTTTCTCCTTTACCGGAAACAAAGCATCATTTGCAGGCGATCTCAATTTCTATGGCAAGGCAGGGGTTAACTTTTATACACAAATCAAAACAATAACTCAGAACTGGAAGGATTCGGTTAACGAGGACAAGATTAACATGGCAATGCCAACTTCTCAAAAATCTTAA 1533 0.4364 MATSHFSTHPNSLRVPNLIGGKFVESKSLTFIDVINPATQDVVSQVPLTTNEEFKAAVAAAKKAFPSWRNTPVTKRQRVMLKFQELIRRDMDKLATSVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVANGIDTFSVKEPIGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASMLLAQLAMEAGLPEGVLSIVHGAHDTVNAICDHDDIKAISFVGSNVAGMHIYARAAAKGKRVQSNMGAKNHAIVMPDASVDATINALIAAGFGAAGQRCMALSTVVFVGGSKPWESILVERAKALKVNAGTEPDADLGPVISIQAKERIHKLIQSGFESGARLLLDGRSIVVPGYESGNFIGPTILADVSSDMECYKEEIFGPVLLLTEADSLDEAINFVNENKYGNGATIFTSSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTITQNWKDSVNEDKINMAMPTSQKS* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4906 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 19 468 IPR016162 GO:0016491
Psa1g4906 510 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 285 296 IPR016160 GO:0016491
Psa1g4906 510 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 1 510 IPR010061 GO:0004491
Psa1g4906 510 CDD ALDH_F6_MMSDH 15 491 IPR010061 GO:0004491
Psa1g4906 510 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 1 510 - -
Psa1g4906 510 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 17 491 IPR010061 GO:0004491
Psa1g4906 510 SUPERFAMILY ALDH-like 10 492 IPR016161 GO:0016491
Psa1g4906 510 Pfam Aldehyde dehydrogenase family 23 487 IPR015590 GO:0016491
Psa1g4906 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 260 460 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4906 Psa-Chr1 364080117 364084343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4906 7 475 Aldehyde Dehydrogenase Gene Family AT2G14170 81.277 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4906 K00140 - gmx:100783569 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4906 1 364080117 364084343 Psa1g4906 1 364080117 364084343 ECH