Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4895 ATGGCTGCGCACTCAACGCATCTACTGATGATGGTGGTTGTTACGGTCTTTTTCACAAAAGCAGCAACTCAGTTACTATCACTACCAAACTGCCCAACAAAGTGTGGCTCTGTCACCATTCCCTTCCCATTTGGAACCACCAAGGATTGTTCCTTGGACAGCACCTTTCTCATCAATTGCAACAAAACATCTTCATCTTCAACCTCATCACAAGTACCTTCCTTGTTACATAGTAATCGAAGTGTCCTAAGCATCTCACTCGACGGTGAACTTCACGTTGCATGGCCAGTAGCCAAAGATTGCTATGCTGAAAATAGCAAACTTGTGAGCCTAGCATATTGGGATATCATCATGAAACATTTTTCCGTTTCATCAACTCGAAACAAGTTCATCGCAGTTGGCTGTGACACGGTGGGAGCACTCTCAGTACATGATTACGGGGGAAACAACTACACTACAGGATGTGTGGCTTTGTGCAACAAGCTTGATGATATCGTGGCCAATGAAGCTTGCTCCGGCACTGGTTGTTGCGAGATTTCAATACCCCAAGGGCATGTGTTAACTGAAGTAATCTATAGTTCTGGAAGTATATTCAACAATCACTCAGCAGTACATAACTTCAATCCCTGTGGTTATGCTTTTTTGGTTGAAAATGGAGCCTACAACTTCAAATCCACAGACCTCCTCAAGTTGGAGAAGAAGGAGTTTCCTGTGTTATTGGACTGGGCAGTAGGGAACCAAACATGCCAGCAAGCTCAGAAGGATCTTTCAAACTATGCCTGTAAGGACAAAAGAAGTACGTGTTACGATGCGACCGAGAGATCTGGTTACCGTTGCAGATGCTTTCACGGATATTGGGGAAATCCTTACCTCATTCATGGTTGCCAAGATATTAATGAATGCATGGATTCCAATGACTGCGTTGAGGGAGCAACATGCATCAATACTCCCGGAAGCTACCATTGTTTATGTCCGGCAAGATACGAGGGAAACGGGAAGATGAATGGAACAAGATGCAGTCAAAAGGCAAATACCAAATCAAGGAAAGAGATCATATTGATCACTGCATTGAGTGTCAGCATAAGCCTCGTAGCACTACTGGTTGGAAGCTTTTATGCATATTTGGCATTGAAGAAAAGAAAGCTCATTAAACTTAAAGAACAATTTTTTCAACAAAACGGTGGCTTACTGTTACAGCAACAACTAGTGTTGCATGGAGGATCAGATGAAACAACTAAAGTCTTCACTGTTGAGGAGCTAAATGAAGCAACCAACAACTTCGACGAAAGCAAGATCCTAGGCCAAGGTGGTCAGGGAACAGTTTACAAAGGAGTTTTACAAGATAAAAGAATTGTAGCAATAAAGAAGTCCAAAATTAATGACCCAAACCAGATTGAACCGTTCATCAATGAAGTGATTGTACTTTCCCAAATCAACCATAGAAATGTGGTAAAGCTTTTGGGTTGTTGTCTAGAGACAGAAGTTCCCTTGCTTGTTTATGAATTCATTTCTAATGAGCTAATGACAGGAAAAAAGGCACTATCTTTTAGCAGGCCAGAGGTAGATAGAAACCTTGCAGTGTACTTTGTTGCTTCAATGAAAGAGAACCGGTTACTTCATATTTTGGACAACAATATAGATGATATGAATACCGAGCAACTTAAGAAAGTTGCCCATATTGCAGAAAGGTGTTTAAGGGTGAAGGGTGAGGAAAGACCCACCATGAAAGAAGTGGCAATGGAACTAGAGGGAATGTTAGTTTTTGAAGAGCACCATTGGGAAAGTGGCAAATTCTCTTCAGACAAAGCAGCGTCATCGACTATCAACTTTGAAAACGGCGTTTACAGAAGTGGCATTGTTTCTTCTGACTCATATAGCATAAACCAGTTATCATTGTCATTGATTGGTGGAAGATGA 1917 0.4158 MAAHSTHLLMMVVVTVFFTKAATQLLSLPNCPTKCGSVTIPFPFGTTKDCSLDSTFLINCNKTSSSSTSSQVPSLLHSNRSVLSISLDGELHVAWPVAKDCYAENSKLVSLAYWDIIMKHFSVSSTRNKFIAVGCDTVGALSVHDYGGNNYTTGCVALCNKLDDIVANEACSGTGCCEISIPQGHVLTEVIYSSGSIFNNHSAVHNFNPCGYAFLVENGAYNFKSTDLLKLEKKEFPVLLDWAVGNQTCQQAQKDLSNYACKDKRSTCYDATERSGYRCRCFHGYWGNPYLIHGCQDINECMDSNDCVEGATCINTPGSYHCLCPARYEGNGKMNGTRCSQKANTKSRKEIILITALSVSISLVALLVGSFYAYLALKKRKLIKLKEQFFQQNGGLLLQQQLVLHGGSDETTKVFTVEELNEATNNFDESKILGQGGQGTVYKGVLQDKRIVAIKKSKINDPNQIEPFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFISNELMTGKKALSFSRPEVDRNLAVYFVASMKENRLLHILDNNIDDMNTEQLKKVAHIAERCLRVKGEERPTMKEVAMELEGMLVFEEHHWESGKFSSDKAASSTINFENGVYRSGIVSSDSYSINQLSLSLIGGR* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4895 638 Gene3D Phosphorylase Kinase; domain 1 404 501 - -
Psa1g4895 638 ProSiteProfiles EGF-like domain profile. 297 340 IPR000742 -
Psa1g4895 638 ProSiteProfiles Protein kinase domain profile. 427 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4895 638 SMART egf_5 300 340 IPR000742 -
Psa1g4895 638 SMART egf_5 248 296 IPR000742 -
Psa1g4895 638 ProSitePatterns Calcium-binding EGF-like domain signature. 297 322 IPR018097 GO:0005509
Psa1g4895 638 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 506 603 - -
Psa1g4895 638 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 13 505 - -
Psa1g4895 638 Gene3D Laminin 246 339 - -
Psa1g4895 638 Pfam Protein kinase domain 428 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4895 638 Pfam Calcium-binding EGF domain 297 339 IPR001881 GO:0005509
Psa1g4895 638 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 313 324 IPR000152 -
Psa1g4895 638 Gene3D Transferase(Phosphotransferase) domain 1 502 605 - -
Psa1g4895 638 CDD EGF_CA 297 330 - -
Psa1g4895 638 Pfam Wall-associated receptor kinase galacturonan-binding 31 89 IPR025287 GO:0030247
Psa1g4895 638 SUPERFAMILY EGF/Laminin 296 332 - -
Psa1g4895 638 SMART egfca_6 297 340 IPR001881 GO:0005509
Psa1g4895 638 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 505 IPR045274 GO:0007166
Psa1g4895 638 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 506 603 IPR045274 GO:0007166
Psa1g4895 638 SUPERFAMILY Protein kinase-like (PK-like) 413 509 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4895 Psa-Chr1 363769241 363773169 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4895 499 593 Receptor kinase-like Gene Family AT1G21230 46.465 1.01e-19 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Psa1g4895 Pkinase 2.4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4895 - - mtr:MTR_3g088780 681.019