Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4893 ATGCCTATGGCTGTGCACTCAAAACAGCTGCTGTCGCTGCTGATGGTCTTTATTGCAAAAGCAGCTACTCAGTTAATATCTATGCCAAACTGTCCAACAAAGTGTGGCTCTGTCACTATTCCCTTCCCATTTGGAACCACCAAGGATTGTTCCTTAGACAGCACCTTTCTCATCAATTGCAACAAAACATCTTCATCTTCAACCTCACCACAAGTACCTTCCTTGCCACATAGTAATCAAACTGTCCTAAACATCTCAGTCAACGGCGAACTTCATGTTGCATGGCCAGTAGCCAGAGATTGCTATGCTGAAAATAGAAAACTTGTGAACCAAACATATTGGGGTATCGATATAAAACATTTTTCCATTTCGTCAACTCGAAACAAGTTGGTCGCAGTTGGCTGTGACACTATTGGAGCCCTCTCAGCATATGATTATGGGGGAAACAACTACACCACAGGATGTGTGGCTTTGTGTAACAGGCTTAATGATATTGTGGCCAATGAATCTTGCTCCGGCACTGGTTGTTGCGAGATTTCAATACCCCAAGGTCATGTGTTAAATCAAGTAGCCTATACTTCTGGAAGTGTCTTCAGCAATCATTCTGCAGTACATGACTTCAATCCCTGTGGTTATGCGTTTTTGGTTGAAAATGGAGCCTACAACTTTGAATCTCAAGACATCCTCAAGTTGGAGAAGAAGGAGTTTCCTGTGTTGTTGGACTGGGCGGTAGGGAATCAAACATGCCAGCAAGCTCAGAAGGATCTTTCAAGTTATGCATGTAAGGACAACAAGAGTACATGTTATGATGCAACTGAAAGATCTGGTTACCTTTGTAGATGCTTTGATGGATATTGGGGAAATCCTTACCTCATTCACGGTTGCGAAGATATAAATGAATGTGTGGAGTCCAATGACTGTGTTGAGGGAGCAACATGCATCAATCTTCCAGGAAGCTACCATTGTTTATGTCCAGCAGAATATGAGGGAAATGGGAAGATGAATGGAACAAAATGTAGTCTGAAATCCAGTACTAAAACAAGGAAAGAGATCATACTGATCATTGCCATGAGTGTCAGCATAAGTTTCGCAGCACTACTGGTGGGAAGCTTTTATGTGTACTTGGCATTGAAGAAAAGAAGGCTCATTAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGCATGCTGTTACAACAAAAGATAGTGAGGCGTGGTAAGTCAACTGAAACAGCTAAAGTATTCACTGTTGAGGAGCTAAATGAAGCAACCAACAACTTCGACGAAAGCAAGATCCTAGGTCAAGGTGGTCAGGGAACAGTTTATAAAGGAGTTTTACAAGATAAAAGAATTGTAGCAATAAAGAAATCAAAAATCAGTGACAGAAAGCAGATTGAGCCGTTCATCAACGAAGTGATTGTGCTTTCCCAAATCAACCATCGAAATGTGGTAAGGCTTTTGGGTTGTTGTTTAGAGACAGAAGTTCCCTTGCTTGTTTATGAATTCATTTCTAATGGTACTGTATATGAGCATCTTCATGATCAAAACCAAATTTTAAAGCTTACATGGAAAACAAGATTGAGAATAGCCAAAGAAACTGCTGGAGTCCTAGCATACTTGCATTCTGCTGCATCTACGCCAATCATACATAGAGATGTGAAATCTTCAAATATACTCCTAGATCACAATCTCATTGCAAAGATTTCTGACTTTGGAGCTTCTAGGATTGTTCCTCTTGATCATAGCCAGATAACCACTCTAGTACAGGGGACATTAGGGTATCTTGACCCAGAATATTTCCACACAAGCCAGTTGACAGACAAAAGTGACGTCTATAGCTTTGGGGTTGTCCTAGCAGAGCTTCTGACAGGAAAGAAGGCATTATCTTTTAGCAGGCCAGAAGGAGATAGAAACCTTGCAGTGTACTTTGTTTCTTCAATGAAAAAGGGTCGGGTACTTCATATTTTGGACAAAAGTTTAGATGGGTCTAATACTGAGCAACTAAAGAAAGTTGCCCATATTGCAGAAAGGTGTTTAAGGGTAAAGGGTGAGGAAAGACCCACCATGAAAGAAGTGGCAAAGGAACTAGAGGGAATATTAGTTTTTGAAGAGCACCGTTGGGGAAGTGGCAATTTGTCTTCAGAAGAGACTGACAACTTGCTCAGAGAAGTGTCGTCGGTTATCAATGTTGAAGATGGCGGCATTAATTCCTCTGACTCATATAGCATAAACCAGATAACGATGTCAACTATTGGTGGAAGATGA 2265 0.4079 MPMAVHSKQLLSLLMVFIAKAATQLISMPNCPTKCGSVTIPFPFGTTKDCSLDSTFLINCNKTSSSSTSPQVPSLPHSNQTVLNISVNGELHVAWPVARDCYAENRKLVNQTYWGIDIKHFSISSTRNKLVAVGCDTIGALSAYDYGGNNYTTGCVALCNRLNDIVANESCSGTGCCEISIPQGHVLNQVAYTSGSVFSNHSAVHDFNPCGYAFLVENGAYNFESQDILKLEKKEFPVLLDWAVGNQTCQQAQKDLSSYACKDNKSTCYDATERSGYLCRCFDGYWGNPYLIHGCEDINECVESNDCVEGATCINLPGSYHCLCPAEYEGNGKMNGTKCSLKSSTKTRKEIILIIAMSVSISFAALLVGSFYVYLALKKRRLIKLKEQFFQQNGGMLLQQKIVRRGKSTETAKVFTVEELNEATNNFDESKILGQGGQGTVYKGVLQDKRIVAIKKSKISDRKQIEPFINEVIVLSQINHRNVVRLLGCCLETEVPLLVYEFISNGTVYEHLHDQNQILKLTWKTRLRIAKETAGVLAYLHSAASTPIIHRDVKSSNILLDHNLIAKISDFGASRIVPLDHSQITTLVQGTLGYLDPEYFHTSQLTDKSDVYSFGVVLAELLTGKKALSFSRPEGDRNLAVYFVSSMKKGRVLHILDKSLDGSNTEQLKKVAHIAERCLRVKGEERPTMKEVAKELEGILVFEEHRWGSGNLSSEETDNLLREVSSVINVEDGGINSSDSYSINQITMSTIGGR* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4893 754 Pfam Protein kinase domain 428 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4893 754 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 12 734 - -
Psa1g4893 754 ProSitePatterns Calcium-binding EGF-like domain signature. 297 322 IPR018097 GO:0005509
Psa1g4893 754 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 12 734 IPR045274 GO:0007166
Psa1g4893 754 SMART serkin_6 427 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4893 754 Gene3D Transferase(Phosphotransferase) domain 1 503 710 - -
Psa1g4893 754 ProSiteProfiles Protein kinase domain profile. 427 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4893 754 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 313 324 IPR000152 -
Psa1g4893 754 CDD EGF_CA 297 330 - -
Psa1g4893 754 CDD STKc_IRAK 433 699 - -
Psa1g4893 754 ProSiteProfiles EGF-like domain profile. 297 340 IPR000742 -
Psa1g4893 754 SMART egf_5 248 296 IPR000742 -
Psa1g4893 754 SMART egf_5 300 340 IPR000742 -
Psa1g4893 754 Gene3D Phosphorylase Kinase; domain 1 402 502 - -
Psa1g4893 754 SUPERFAMILY Growth factor receptor domain 244 329 IPR009030 -
Psa1g4893 754 SUPERFAMILY EGF/Laminin 297 332 - -
Psa1g4893 754 SUPERFAMILY Protein kinase-like (PK-like) 410 697 IPR011009 -
Psa1g4893 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Psa1g4893 754 Pfam Calcium-binding EGF domain 297 339 IPR001881 GO:0005509
Psa1g4893 754 SMART egfca_6 297 340 IPR001881 GO:0005509
Psa1g4893 754 Pfam Wall-associated receptor kinase galacturonan-binding 31 89 IPR025287 GO:0030247
Psa1g4893 754 Gene3D Laminin 246 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4893 Psa-Chr1 363755216 363759130 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4893 3 731 Receptor kinase-like Gene Family AT1G21230 46.774 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Psa1g4893 Pkinase 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4893 - - mtr:MTR_3g088780 1011.13