Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4877 ATGAAAGGTGTTATCGAGCGCTATAACAAACAGAAAGAAGAACAGCATCAGCTAATGAATCCTGCTTCAGAAGTCAAGTTTTGGCGGACAGAAGCAGCTGGACTAAGACAACAACTGCAGTACCTGCAAGAAAGTCATAGGCAATTGATGGGTGAAGGACTTTCTGGCTTGGGTATCAAAGAACTACAAAATCTGGAAAATCAACTGGAGATTAGTCTGAAGGGTGTTCGAATGAAAAAGGATCATATTTTGACTAATGAGATTAAAGAATTACACCAAAAGGGAACTCTTGTCCATCAAGAAAATGTAGAACTCCATAAAAAGATGGATTTCATCCAGAAAGAAAATGCAGAGCTACAGAAGAAGGTTTATGAAGCAAGGAGTTCAAATGAAGAAAATGTGGCATCCAATCTTTCATGCACTATCAGAAATGGATATGATTTACATGCGCCTATTAGTCTCCAGCTAAGCCAGCCACAGACTCAATACATTGAACCAGTCAGCAAAATCATGAAATTAGGATTACAGCTGCATTCCTAA 540 0.387 MKGVIERYNKQKEEQHQLMNPASEVKFWRTEAAGLRQQLQYLQESHRQLMGEGLSGLGIKELQNLENQLEISLKGVRMKKDHILTNEIKELHQKGTLVHQENVELHKKMDFIQKENAELQKKVYEARSSNEENVASNLSCTIRNGYDLHAPISLQLSQPQTQYIEPVSKIMKLGLQLHS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4877 179 Coils Coil 59 79 - -
Psa1g4877 179 Coils Coil 102 134 - -
Psa1g4877 179 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 177 - -
Psa1g4877 179 Pfam K-box region 23 109 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa1g4877 179 ProSiteProfiles K-box domain profile. 25 115 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa1g4877 179 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4877 Psa-Chr1 362945586 362947866 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4877 1 168 MADS-box Gene Family AT2G22630 51.190 6.54e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4877 K09264 - gmx:100808145 281.952