Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4868 ATGGAGAACTATTCGTATCAATCATACCCAGATTCAGGAGAATCTTCACCTCGTTCTAGAGAAATCGACTTCGAAAACCCACCCACACCAATCCCATGGGACGAACAACAACATCATCATCAACAACAAACTAGTAACTACAAAGCCAAGTTCATGTGTAGCTACGGTGGCAAGATCCAACCACGAACACACGACAACCAACTCTCTTACGTTGGTGGCGAAACCAAAATCCTAGCCGTTGATCGCAACATCAAATTCTCTTCAATCATTTCTAAACTCTGTTCTCTCATAGAATCACCTGATGTTTCTTTTAAGTACCAACTCCCCGGCGAGGATCTCGATGCTCTTATCTCTGTCACCAACGACGATGATCTCGACCACATGATGCATGAATACGATCGTCTCTACCGTGCTTCCGCTAAACCCGCACGTATGCGATTATTCCTCTTTGTTAACGATTCTGATTCTGCTTCAAATTCAAACCCACCCGACCCGATTAAACCTTCCAACGTTGATTATATGTTTGGAATTGAAAAGCCTGTCGCCGTCGTTGCTCCGCCTCCGCCCGTCGTTAAATTTAACGATCCCGTGCCGGAAATGGTTGCTCCACCACCTGAGTATCTTACGCGACCGGGTTTGAATTTGAATCCGTCTGATCGGGTTATTGTTTCGGATCCGGGTTTGAACCACCCGTTGGATATTCAGAGGCAGTTACAACGGATGCAGATAGCGGAAAACGAGCAAAATGCGTATCGGAGGAAAAGTGAAGATGGTCTCGTCGGAAACTATCCTCCCGGAGATTATTACGTTCAGAAGACAACGCCTGAGAAATTTCCAATGTCGAACTTCGCGCCACCGCAGCAGCAGCAGCAGCACACTGGTTATTGGCAGGAAAAGCCTGTTTCTGGGGAGGCTTATCCACCGGTTGCTCCTGGAGGAGGTGACCAGCCTCAGCCTGTTTATATGGTACCAGCGCCGGGAAATTACTATCATGCACCGGTGATGCGTCCACCGGTAAGTCAAGGATACTACGCGGTGCAACGAATGTCATCTGATGGTTACCGTGAAGCGCAGGTTTACGGCGGCGCTCCACCTCCCAAAGTGTCGGCGACATATGCAGCGGCGCAACCGGTAAAAGGTCCTGCGTATGCGGAAGGTGTCAGTGTGGTTCGATCAACTGGGATACCGGATAATGCGCCAGGTTCCTACGCACAAGTGGCGTATGATAGTGCCACTGGCAGACAGGTTTATTATAATACGCCGGGTGGGGTAGTACACGCTCCTCCATACCAAGGTGTTGCTGCACCCGTCACCACAGACGTTAAAGTGATGAGCAAGATTTCTCAAGGTTCAGTGTGA 1359 0.4915 MENYSYQSYPDSGESSPRSREIDFENPPTPIPWDEQQHHHQQQTSNYKAKFMCSYGGKIQPRTHDNQLSYVGGETKILAVDRNIKFSSIISKLCSLIESPDVSFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASAKPARMRLFLFVNDSDSASNSNPPDPIKPSNVDYMFGIEKPVAVVAPPPPVVKFNDPVPEMVAPPPEYLTRPGLNLNPSDRVIVSDPGLNHPLDIQRQLQRMQIAENEQNAYRRKSEDGLVGNYPPGDYYVQKTTPEKFPMSNFAPPQQQQQHTGYWQEKPVSGEAYPPVAPGGGDQPQPVYMVPAPGNYYHAPVMRPPVSQGYYAVQRMSSDGYREAQVYGGAPPPKVSATYAAAQPVKGPAYAEGVSVVRSTGIPDNAPGSYAQVAYDSATGRQVYYNTPGGVVHAPPYQGVAAPVTTDVKVMSKISQGSV* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4868 452 Pfam PB1 domain 64 151 IPR000270 GO:0005515
Psa1g4868 452 SMART PB1_new 63 152 IPR000270 GO:0005515
Psa1g4868 452 Coils Coil 234 254 - -
Psa1g4868 452 CDD PB1_UP2 52 150 - -
Psa1g4868 452 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 1 445 - -
Psa1g4868 452 MobiDBLite consensus disorder prediction 1 15 - -
Psa1g4868 452 Gene3D - 69 153 - -
Psa1g4868 452 PANTHER OS05G0427100 PROTEIN-RELATED 1 445 - -
Psa1g4868 452 MobiDBLite consensus disorder prediction 1 45 - -
Psa1g4868 452 SUPERFAMILY CAD & PB1 domains 64 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4868 Psa-Chr1 362524826 362527247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4868 47 150 MAP Kinase Kinase Kinase AT5G57610 49.038 4.84e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4868 - - gmx:100780332 549.28