Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4859 ATGAGTTCTCATATGGAAATTTCATCAATCAGAGGGTTACCAGAATTGGGAGGAATAGAGGATCCTAACTTTCTACATCAGTGGAATAATCACTTAAATTCTATTGATACAAATAACTTAAGTGCTTCTGACTTTGGAGATGCTTTACAGAAGCACTTTTTGTCAAATAATCAAAACTTCAACAACAAAACATGCATGGAAGCTTCTGAAAGAGCGGCGAAACAGCTTAAGAATAGCAGCTGGAATTACAACAGCAGTAATCTTCAAACATCAGAAACACAGTATGCGAATCTTCTTTCGTTCGCTGATTCGAATTACGCGAATCAATTGGGACTATTGAAGCCTAAGTCTGAGATGATGGTGTGTCCGAAGATCGATAATAATATTAGTACTACTACTATTGCAAACATGTTGATGAATCAAGGAAACTTGTTGGAGAATCATCAGAACCATGTGTTTAAGGCTTTTCAAGAGGCTAAAGATGTTGAGACTCGTCCTAGTAAACTTTCTCAAGCTCATGATCACATTGTAGCGGAAAGGAAGCGTCGCGAGAAGCTTAGCCAGCGATTCATCGCTCTTTCGGCTCTTGTTCCAAACCTAAAGAAGATGGATAAAGCTTCTGTTCTTGGAGAAGCTATAAGGTACTTGAAGCAAATGGAAGAGAAAGTGAGTGTTCTTGAGGAGGAACAGAAAAGGAAGAAAACTGTGGAATCTGTTGTAGTTGTGAAGAAATCTAAACTTTGTTATGATGCTGAGGACTTTTGTTCAGATACTGATGATACATTTGATGAAACATTACCTGAAATTGAAGCAAGATTTTGTGAAAGAAGTGTTCTCATTAGACTTCACTGTTTGAAAAATCAAGGAGTTATAGAGAAAACAGTGACTGAAATTGAGAAACTTCATCTAAAAGTCATCAATAGCAGTGCCTTGACTTTTGGCAATTTCACCCTTGATATAACCATTATTGCTCAGATGGATGTTGGATTTTGCATGACATTGAAGGAACTTGTGAGAAAGCTACGATCAGCATATTCATCTTTCATGTGA 1050 0.3724 MSSHMEISSIRGLPELGGIEDPNFLHQWNNHLNSIDTNNLSASDFGDALQKHFLSNNQNFNNKTCMEASERAAKQLKNSSWNYNSSNLQTSETQYANLLSFADSNYANQLGLLKPKSEMMVCPKIDNNISTTTIANMLMNQGNLLENHQNHVFKAFQEAKDVETRPSKLSQAHDHIVAERKRREKLSQRFIALSALVPNLKKMDKASVLGEAIRYLKQMEEKVSVLEEEQKRKKTVESVVVVKKSKLCYDAEDFCSDTDDTFDETLPEIEARFCERSVLIRLHCLKNQGVIEKTVTEIEKLHLKVINSSALTFGNFTLDITIIAQMDVGFCMTLKELVRKLRSAYSSFM* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4859 349 Pfam Helix-loop-helix DNA-binding domain 175 220 IPR011598 GO:0046983
Psa1g4859 349 Gene3D - 167 243 IPR036638 GO:0046983
Psa1g4859 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Psa1g4859 349 Coils Coil 209 236 - -
Psa1g4859 349 SMART finulus 176 225 IPR011598 GO:0046983
Psa1g4859 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 232 IPR036638 GO:0046983
Psa1g4859 349 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 6 348 - -
Psa1g4859 349 PANTHER BHLH TRANSCRIPTION FACTOR 6 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4859 Psa-Chr1 362246244 362248404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4859 170 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 56.831 1.49e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa1g4859 HLH 9.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4859 - - gmx:100798018 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4859 1 362246244 362248404 Psa1g4859 1 362246244 362248404 ECH
Psa7g2395 7 170030339 170032444 Psa1g4859 1 362246244 362248404 PCT