Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4857 ATGTCCACCGGACCACCTTCCCGCCATGTCTCACCACCGTCCATTTTCCTCACCACTCTCTTTCTCCTCGCCCTCATTCCCCTCTCTCACTCAAACGACCTTCAATCTCTCCTCCACTTCAAATCATCCATCCAAACTCCCATTCCAAACATTTTCACTTCATGGAACCTATCAAACTCACCCTGCAACTTCACCGGAATCATCTGTAACTCCAAAGGTTCCGTCACAGAAATCAATCTTCCAATGAAGAATCTCACTGGAACTATTCCTTTTGATTCAATCTGCAACCTTCAATCTCTTGAGAAAATCTCTTTAGAATCCAACTTTTTGAACGGAAATATAACCGAAGATTTGAAGAATTGCATAAACTTGAAGTACTTAGATTTAGGTGGAAACTCATTCACTGGAACAGTACCTGAATTTTCATCTTTGAACAAGTTAGAGTACTTGAACCTAAATCTAAGTGGAGTTTCTGGTAAATTTCCATGGAAATCATTGGAAAATCTTAGAACTCTCACTTTCTTAAGCCTTGGTGATAACTTATTTGAAAAAGCTTCTTTTCCTTTGGAGATTCTAAACCTTGAGAATTTGTATTGGCTTTATCTAACCAATATCAGTATCTTTGGGAAAATCCCAATTGGTATTGGAAATCTCAGTCTACTTCAGCATTTTGAGATTTCTGATAACAATTTATCTGGTGAGATTCCTCATGATATTGGAAAGCTTAAGAATCTAAGGCTACTTGAGATATATGATAACAATTTGAGCGGAAAAATCCCGTTTGGATTCGGTAATCTTACCAATCTTGTTCAGTTCGATGCTTCGAATAATCACCTTGAAGGTGATCTTTCTGAGATAAAGTCCTTGAAAAATCTTCAATCCTTGCAGCTTTTCCAGAACAGATTCTCCGGAGAGATTCCACAAGAGCTTGGTGATTTTAAGTATCTTACCCAACTTTCTCTTTACGATAACAAACTCACTGGTTTTCTTCCGCAAAAGCTCGGTTTTTGGATTGGAATGGAATACATAGATGTTTCAGACAATTTACTTTCTGGTCCTATTCCACCTGATATGTGCAAGAACAATCAAATTACTGATATAGCACTTTTGAATAACAGTTTCACAGGAAGTATACCAGAAAACTACGCGAATTGCACTGCTTTGGTACGTTTTCGATTAACAAAGAACTCTCTTTCAGGTGTTGTTCCTAAGGGTATATGGGGTTTACCAAATTTGGAACTTTTTGATCTTGGAAGGAACCAATTTGAAGGTTCAATAGCTTCTGATATAGGCAAAGCTAAGTCTCTAGCTCAGCTTTTTTTATCTGATAATCAATTCTCAGGTGAGTTGCCTTTGGAAATCTCTGAAGCTTCTTCTTTGGTTTCAATTCAGTTAAGTTTGAATCGAGTTTCTGGTCACATACCGGAAACTATAGGCAAGTTGAAGAAACTAAGTAGTCTTACTTTGAATAACAACAATCTTTCTGGTAATTTACCTGATTCTATTGGTTCTTGTGTTTCTCTTACTGAAGTAAACCTTGCTGAAAATTCGATTTCTGGTGTGGTTCCGATTAGTATTGGTTCTTTGCTTACACTTAATTCGTTGAATTTGTCCTCGAACGAGTTTTCTGGTGAGATTCCGTCGAGTTTATCGTCTCTTAAACTTAGCCTTCTTGATTTATCAAACAATCAGTTTTTTGGTTCTATACCAGACTCACTTGCTATTTCAGCTTTCAAAGATGGTTTCATGGGAAATCCTGGTTTATGTAGCCAGATTTTGAAGAACTTTCAACCATGTTCAGTGGAATCTAGCGGCTCGAGGCAAGCCCGAAACCTCGTGTTCTTTTTCATTGCTGGTTTAGTGGTTCTGATTCTTTCATTATCATATTTCCTCTTTATGAGACTTAAACAGAAGAACAAGTTCGAGAAGCAAGTGCTTAAGACTAATTCTTGGAATTTCAAGCAGTACCATGTGTTGAACATCAATGAGAATGAAATTATTGAAGGAATCAAAGCCGACAATGTGATCGGAAAAGGAGGGTCAGGAAATGTTTACAAGGTTGAGCTAAAGAGCGGCGAAGTTTTCGCTGTCAAACACATATGGACTTCAAATCCAAGAAATGATTATAGGAGCAGCTCAGCAATGCTAAAAAGGAGTTCGAGTTCGCCCGAGTATGACGCGGAGGTTGCGACTTTGAGTTCTGTAAGGCATGTGAATGTAGTGAAGCTATATTGTAGTATCACAAGTGAAGATAGTAGTTTGCTCGTTTACGAGTTTTTACCGAATGGTAGTTTGTGGGAAAGGTTGCATACTTGTAAGAAGACTCAGATGAGGTGGGAGGTTCGGTACGATATTGCGTTGGGTTCGGCTAGAGGTTTAGAGTATTTGCATCATGGTTGTGATAGGCCTGTTATGCATAGGGATGTTAAGTCGAGTAACATATTGCTCGATGAGGAATGGAAGCCGAGGATCGCTGATTTCGGACTCGCGAAGATCGTGCACGGAGGAGCAGGTAATTGGACTCATGTCATTGCTGGAACACTCGGCTATATGGCTCCTGAATATGCTTACACTTGTAAGGTGACAGAGAAGAGTGATGTTTACAGCTTTGGCGTAGTACTGATGGAGTTAGTAACAGGCAAGAAGCCTGTGGAGCCGGAGTTCGGAGAGAATAATGATATTGTCAGTTGGGTATGCAGTAACATTAGGAGCAAAGAAAGTGTACTTGAATTGGTGGATTCTAGGATCGCAAAGCATTTCAAAGAAGATGCTATTAAGGTGTTGAGAATCGCGACGTTGTGCACGGCGAAAGTTCCATCTTCGAGACCATCGATGAGAATGTTGGTTCAAATGCTGGAAGACGCGGATCCATCCGCTTCATCGAAAGTTGTTGTCACCATAGATAGTTAA 2910 0.3952 MSTGPPSRHVSPPSIFLTTLFLLALIPLSHSNDLQSLLHFKSSIQTPIPNIFTSWNLSNSPCNFTGIICNSKGSVTEINLPMKNLTGTIPFDSICNLQSLEKISLESNFLNGNITEDLKNCINLKYLDLGGNSFTGTVPEFSSLNKLEYLNLNLSGVSGKFPWKSLENLRTLTFLSLGDNLFEKASFPLEILNLENLYWLYLTNISIFGKIPIGIGNLSLLQHFEISDNNLSGEIPHDIGKLKNLRLLEIYDNNLSGKIPFGFGNLTNLVQFDASNNHLEGDLSEIKSLKNLQSLQLFQNRFSGEIPQELGDFKYLTQLSLYDNKLTGFLPQKLGFWIGMEYIDVSDNLLSGPIPPDMCKNNQITDIALLNNSFTGSIPENYANCTALVRFRLTKNSLSGVVPKGIWGLPNLELFDLGRNQFEGSIASDIGKAKSLAQLFLSDNQFSGELPLEISEASSLVSIQLSLNRVSGHIPETIGKLKKLSSLTLNNNNLSGNLPDSIGSCVSLTEVNLAENSISGVVPISIGSLLTLNSLNLSSNEFSGEIPSSLSSLKLSLLDLSNNQFFGSIPDSLAISAFKDGFMGNPGLCSQILKNFQPCSVESSGSRQARNLVFFFIAGLVVLILSLSYFLFMRLKQKNKFEKQVLKTNSWNFKQYHVLNINENEIIEGIKADNVIGKGGSGNVYKVELKSGEVFAVKHIWTSNPRNDYRSSSAMLKRSSSSPEYDAEVATLSSVRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWERLHTCKKTQMRWEVRYDIALGSARGLEYLHHGCDRPVMHRDVKSSNILLDEEWKPRIADFGLAKIVHGGAGNWTHVIAGTLGYMAPEYAYTCKVTEKSDVYSFGVVLMELVTGKKPVEPEFGENNDIVSWVCSNIRSKESVLELVDSRIAKHFKEDAIKVLRIATLCTAKVPSSRPSMRMLVQMLEDADPSASSKVVVTIDS* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4857 969 SUPERFAMILY RNI-like 314 590 - -
Psa1g4857 969 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 12 962 - -
Psa1g4857 969 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Psa1g4857 969 Gene3D Transferase(Phosphotransferase) domain 1 760 966 - -
Psa1g4857 969 Gene3D Phosphorylase Kinase; domain 1 651 759 - -
Psa1g4857 969 Gene3D Ribonuclease Inhibitor 186 338 IPR032675 -
Psa1g4857 969 Gene3D Ribonuclease Inhibitor 339 600 IPR032675 -
Psa1g4857 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Psa1g4857 969 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 962 - -
Psa1g4857 969 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524
Psa1g4857 969 CDD STKc_IRAK 676 953 - -
Psa1g4857 969 Pfam Protein kinase domain 673 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4857 969 Gene3D Ribonuclease Inhibitor 32 185 IPR032675 -
Psa1g4857 969 SUPERFAMILY Protein kinase-like (PK-like) 662 953 IPR011009 -
Psa1g4857 969 SMART serkin_6 670 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4857 969 ProSiteProfiles Protein kinase domain profile. 670 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4857 969 SUPERFAMILY L domain-like 50 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4857 Psa-Chr1 362144215 362148304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4857 17 969 Receptor kinase-like Gene Family AT1G09970 56.563 0.0 1052
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa1g4857 Pkinase 6.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4857 - - ccaj:109814095 1363.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4857 1 362144215 362148304 Psa1g4857 1 362144215 362148304 ECH