Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4834 ATGTACAAGGGCTTGAAACAACTGCAACATGAATCCATCCTCAAAACTTGCAAAACAATCAACATCATGACAGAAAAACTCAACCTGCATCTTATTTTTTTCATGACAGGAAGACAAAATCCAACTTATGCCACTGGACTCCTCTTGGCACGTCGGGTTCTCAAGACACTTGAGATGGATGAAGAGTATGAGGGAAATGTTGAGGCTACTAGAGAGGACTATTATGTGGAGCCAGCTGATTCCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTGTTAAGACCACAACTGGAAACCGTGTCTTTGGTGGTCTGAAGGGTGCACTAGATGGTGGTTCGGATATTCCTCACAGTGACAAAAGGTTTGCTGGTTTTGATAAGGAAAAGCAGGAGCTTGATGCTGAGGTTCACCGCAAATATATCTTTGGTGGACATGTTTCTGCCTATATGAAGACTTGGATTGAAGACGAACCATAG 480 0.4375 MYKGLKQLQHESILKTCKTINIMTEKLNLHLIFFMTGRQNPTYATGLLLARRVLKTLEMDEEYEGNVEATREDYYVEPADSRRPFRALLDVGLVKTTTGNRVFGGLKGALDGGSDIPHSDKRFAGFDKEKQELDAEVHRKYIFGGHVSAYMKTWIEDEP* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4834 159 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 42 119 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa1g4834 159 Gene3D - 24 159 - -
Psa1g4834 159 PRINTS Ribosomal protein L5 signature 88 107 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa1g4834 159 PRINTS Ribosomal protein L5 signature 108 127 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa1g4834 159 PRINTS Ribosomal protein L5 signature 150 159 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa1g4834 159 SUPERFAMILY Translational machinery components 27 158 - -
Psa1g4834 159 PANTHER RIBOSOMAL PROTEIN L5-RELATED 42 159 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa1g4834 159 PANTHER PROTEIN L5, PUTATIVE-RELATED 42 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4834 Psa-Chr1 361481900 361482544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4834 42 159 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 80.508 3.55e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4834 K02932 - gmx:100785668 213.772