Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4819 ATGGCAGAAGAATTTCAAGCTGGAATTTGTGGTGAAACATGGTGGAATATTAATAACTCAACAAGAAATGTTTTTCCTCTTATGATAAACTCATCATCATCAACATCATCATGTTCAGGAAGTTATAGTAACTGGCAAAATGAGTTTTTGGGTTTGAAAGAAACTAATAGCTTTGATGTTTCTGATTGTTCTTTGAGTTTTCTTGATTCTCCGAAGCCGCCGGAAATATCGGTTAACGGAACCGGTAGTACTAGTAGCATGTTCTTTGATCTCTCATCTCCAAATTCATCAAATTGGAATCACTCAATATTGTCAGAGAACAATTTTGAGCCTGTGATTCAAGAAGAAAGCACAAAGAATTTCTCATCTTCAATGGAACAAGAATTTTGCATGGATCATCAAAGTTTATCATCATATCCAATTGGATCAGTTGATTCTTATGGTTGTTACCCTTCAAGTTTGATACAAAGTTTATTTGATTCTCAACCACAGCCACAAAACTCACTTTTTACCAACCCTTCTTCTATGTCCTATTCATCTTCAATGCCAAAGCAACAGCTTAGTGGATTGCACTTTTCAAACAATACTCCTTTCTGGAATGCTTCAGCTGAGGCTCTCAATGATATTAGAGCGGGAGTTTTGGCTTCATCACAATCACAATATCATCAATCTCCTAGTTTTCATAACAACAATTTCAATTCCTCAAATACTCTATTAAACAAGTTAAAGAGAGAAAAATCACCAGAAGCAAAAAGTTCATCTGAAGTTACAGTTAAGAGGCAAAGAGTTGAAACTCCATCACCATTACCAACTTTTAAGGTTAGGAAAGAGAAGCTAGGGGACCGTATCACAGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGATACAGCTTCTGTTCTTCATGAAGCCATTGATTACATCAAGTTTCTTCATGATCAAGTCGATGTTTTGAGTACTCCATATATGAAAAATGGATCTCCTATTCAACATCAACAGGGTTGTGATAATGTGAAGGAGCTAGAAAGAAAAAAACAAGATTTAAGAAGTCAAGGGCTTTGTTTGGTGCCAATTTCAAGCACATTTCCAATGACTAATGAGACTAATGTTGATTTTTGGACACCTACATTTGGAGGAACACTCTTTGGCAGATAG 1158 0.3618 MAEEFQAGICGETWWNINNSTRNVFPLMINSSSSTSSCSGSYSNWQNEFLGLKETNSFDVSDCSLSFLDSPKPPEISVNGTGSTSSMFFDLSSPNSSNWNHSILSENNFEPVIQEESTKNFSSSMEQEFCMDHQSLSSYPIGSVDSYGCYPSSLIQSLFDSQPQPQNSLFTNPSSMSYSSSMPKQQLSGLHFSNNTPFWNASAEALNDIRAGVLASSQSQYHQSPSFHNNNFNSSNTLLNKLKREKSPEAKSSSEVTVKRQRVETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIDYIKFLHDQVDVLSTPYMKNGSPIQHQQGCDNVKELERKKQDLRSQGLCLVPISSTFPMTNETNVDFWTPTFGGTLFGR* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4819 385 PANTHER TRANSCRIPTION FACTOR BHLH103 60 368 - -
Psa1g4819 385 MobiDBLite consensus disorder prediction 244 264 - -
Psa1g4819 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 312 IPR011598 GO:0046983
Psa1g4819 385 MobiDBLite consensus disorder prediction 244 258 - -
Psa1g4819 385 Gene3D - 273 335 IPR036638 GO:0046983
Psa1g4819 385 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 60 368 - -
Psa1g4819 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 331 IPR036638 GO:0046983
Psa1g4819 385 Coils Coil 332 352 - -
Psa1g4819 385 CDD bHLH_AtbHLH_like 269 320 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4819 Psa-Chr1 360708392 360711513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4819 1 383 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 37.972 2.79e-59 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4819 - - gmx:100794682 435.647