Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4806 ATGAAAAGGTCCACTTCTGCAAAATTCCACATCTACTTCATATTTTGTGCAAGTTTTTTCATTTCTGCAATCTCTTCTGATACATTAACTTCATCACAATCTCTAGTATATAACCAAACCCTTGCATCTCCAAAAAATGTTTTTGAGTTTGGTTTCTTCAATACAACATCTTCAAAATGGTACATAGGTATATGGTACAAAGATTTTCCAGATAAAACATTTGTTTGGGTTGCAAATAGAGACACTCCTCTTCAAAATTCTAATGGAACTCTCAAGATTCAAGATGATGGAAGCTTGATTCTTCTCAACCAAGAAAGTAGCATCATATGGTCATCGAATCAAACTGTTTCCTCGGTTTCAAATCCTGTTCTTCGTCTTTTGGATAATGGAAATTTGGTTCTCATAGAAGAACAAGAGAAGAACAACACTAACTATATATGGCAGAGTTTTGATCATCCGACCGATACTTTGTTACCGGGTATGAAGCTCGGTTGGAACCTTGATACTCGTGTGGAGATTCGAGTAACGTCGTGGAAAAGTCAAGATGATCCGTCAACCGGAGATTGTTATTTTAGTCTTGATTTTCATGGTGTTACAGATATTTACTTGTGGAACAAGCAACAGCGGGTGTTTAGAACGGGTTCGTGGAATGGTAAAACTTTCGGTGGTGTACCGATACTAAATACTATAGCGGAGCTTAATGATGAAATAGTTGCTGATAATCATCAAGCTTATTACTATCCGGCGGGGTTACTTCAGTCTAATTTGTCTAGACTTATTGTGAATTCGACGGGTTCAATCGAGCGTTACGCGTGGATTTGGAGCACCAAGAGTTGGAGCAAAGTTTGGTTTGCACCAGCTGTAGATTGTGATCATTATGGAGCTTGCGGTCCTTTTGGTATTTGCGACGCGAATGCTTTTCCTATATGCGAGTGTGTGACGGGATTTGATGTCAAGAATCAAAGGCAATGGGATTTGAGAAATTTTTCGGACGGGTGTGTGAGGAAAACGGAATTGGAATGTGGTAAGGATAAGTTCTTGCAATTGAAGGCTGTGCAATTGCCGGATACTAGAAATGTGTTTGTGAACAAGAGCATGACGTTGTTCGAATGTGAAAAGATGTGTCTCGATGATTGTTCTTGCACTGCGTATGCGAATGAAGTGATCACGAACGGCGGAACTGGTTGTGTCATGTGGAATTATAGTCTTGTTGATATGAGACAGTTTTCTGAAGCTGGACAAGATCTGTTTATCAGATTAGCAGCTTCTGATGTAGATGAAGCTGATGCAGGATCTGCAGGAGGGTCCCAAAAGAATGCAGGAAAGATTGCTGGAATTACAATTGCTATAGCTATCTTGATTTTGGGAGTGATTATATTCATTTTGAGGAAGAGAAGAAAATTGAAGAGAATACAGAAAGTGAATACTAATCAGAGAGGTCATTCTGATAAAGGTCAGAAAACATTGTTACATGAGGTGAAGTTTTCAAATAGCGGAGAATATTCCGATGAGAGGAACATCGATGAACTTGAATTGCCACAGTTTGAATTTCATGTCATAGCAGATGCTACAAACTGCTTCTCTTTAGCAAATAAACTTGGAGAAGGAGGCTTTGGAACAGTTTATAAGGGCAGGCTAGTTGATGGCCAGGAAATTGCTGTGAAGAGGTTGTCAACAAGCTCAGGACAAGGAAATGTAGAATTCAAGAACGAGGTAAGATCAATCGCAAAGCTTCAACATCGAAATCTTGTACGTCTCTTCGGTTGCTGCATTGAGAAAGATGAGAAGATGCTGATCTATGAGTACTTGGAAAATAACAGCCTAGACTCTATTTTATTTGACCAAGCAAAGAATTCCAAGCTAGATTGGCCTATGAGATTCAACATCATATGTGGAATAGCCAAAGGGTTACTTTATCTTCATCATGACTCAAGATTTAGAATTATCCATAGAGATCTCAAAGCAAGCAATGTTCTACTTGATAGAGAAATGAATCCAAAGATATCAGATTTCGGGATTGCTAGAATTTTCGACAAGGATCAAACACACTCGAATACAAAGAGAGTTGTTGGAACATATGGCTATATGTCTCCTGAATATGCAATGGGAGGATATTTTTCGGTGAAATCAGATGTTTTTAGTTTTGGAGTTCTCGTGTTGGAGATCATAAGCGGCATGAAGAATCGAGGATTTCATTTCTCAGATGATCTAAATCTCCTTGGACATGCATGGAGGCTATGGAACGAAGGGAAAGTATTGGAACTAATCGATTCATCGTATGCAGATTCATATTCAGAATCTGAAGTTATAAGATGCATAAATGTAGGCCTAATATGTGTCCAAGAGAAAATAGAAGACAGGCCCACAATGCCTTCGGTGGTGATGATGTTGAATAGCGAAACGACAATGCTGCCACAACCGAAGCATCCCGGATTCGTCCTTGGAAGAAATCCAGGTGAATCCGATTCATCTTCGGCTAGGCAAGAAGAATCACACTCAATAAACCAAGTCACAGTTACAATAGTAAATGGCAGATAG 2538 0.3924 MKRSTSAKFHIYFIFCASFFISAISSDTLTSSQSLVYNQTLASPKNVFEFGFFNTTSSKWYIGIWYKDFPDKTFVWVANRDTPLQNSNGTLKIQDDGSLILLNQESSIIWSSNQTVSSVSNPVLRLLDNGNLVLIEEQEKNNTNYIWQSFDHPTDTLLPGMKLGWNLDTRVEIRVTSWKSQDDPSTGDCYFSLDFHGVTDIYLWNKQQRVFRTGSWNGKTFGGVPILNTIAELNDEIVADNHQAYYYPAGLLQSNLSRLIVNSTGSIERYAWIWSTKSWSKVWFAPAVDCDHYGACGPFGICDANAFPICECVTGFDVKNQRQWDLRNFSDGCVRKTELECGKDKFLQLKAVQLPDTRNVFVNKSMTLFECEKMCLDDCSCTAYANEVITNGGTGCVMWNYSLVDMRQFSEAGQDLFIRLAASDVDEADAGSAGGSQKNAGKIAGITIAIAILILGVIIFILRKRRKLKRIQKVNTNQRGHSDKGQKTLLHEVKFSNSGEYSDERNIDELELPQFEFHVIADATNCFSLANKLGEGGFGTVYKGRLVDGQEIAVKRLSTSSGQGNVEFKNEVRSIAKLQHRNLVRLFGCCIEKDEKMLIYEYLENNSLDSILFDQAKNSKLDWPMRFNIICGIAKGLLYLHHDSRFRIIHRDLKASNVLLDREMNPKISDFGIARIFDKDQTHSNTKRVVGTYGYMSPEYAMGGYFSVKSDVFSFGVLVLEIISGMKNRGFHFSDDLNLLGHAWRLWNEGKVLELIDSSYADSYSESEVIRCINVGLICVQEKIEDRPTMPSVVMMLNSETTMLPQPKHPGFVLGRNPGESDSSSARQEESHSINQVTVTIVNGR* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4806 845 SUPERFAMILY Protein kinase-like (PK-like) 512 816 IPR011009 -
Psa1g4806 845 ProSiteProfiles Bulb-type lectin domain profile. 26 147 IPR001480 -
Psa1g4806 845 CDD STKc_IRAK 533 798 - -
Psa1g4806 845 ProSitePatterns Protein kinases ATP-binding region signature. 533 555 IPR017441 GO:0005524
Psa1g4806 845 ProSiteProfiles Protein kinase domain profile. 527 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4806 845 CDD B_lectin 32 153 IPR001480 -
Psa1g4806 845 PIRSF SRK 2 845 IPR024171 GO:0004674
Psa1g4806 845 Pfam D-mannose binding lectin 73 179 IPR001480 -
Psa1g4806 845 Gene3D Transferase(Phosphotransferase) domain 1 603 806 - -
Psa1g4806 845 Pfam Domain of unknown function (DUF3403) 799 845 IPR021820 GO:0004674
Psa1g4806 845 Pfam PAN-like domain 341 406 IPR003609 -
Psa1g4806 845 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 843 - -
Psa1g4806 845 Gene3D - 20 151 IPR036426 -
Psa1g4806 845 SMART blect_4 32 153 IPR001480 -
Psa1g4806 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Psa1g4806 845 Gene3D Phosphorylase Kinase; domain 1 490 602 - -
Psa1g4806 845 ProSiteProfiles PAN/Apple domain profile. 341 421 IPR003609 -
Psa1g4806 845 SMART ntp_6 341 420 IPR003609 -
Psa1g4806 845 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544
Psa1g4806 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
Psa1g4806 845 Pfam Protein tyrosine and serine/threonine kinase 529 796 IPR001245 GO:0004672|GO:0006468
Psa1g4806 845 SMART serkin_6 527 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4806 845 PANTHER - 12 843 - -
Psa1g4806 845 CDD PAN_AP_plant 337 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4806 Psa-Chr1 360141205 360145149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4806 514 834 Receptor kinase-like Gene Family AT4G11530 58.824 1.24e-128 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa1g4806 PK_Tyr_Ser-Thr 7.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4806 - - aip:107621503 1073.92