Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4798 ATGAGAGGAGGTTTCTTCCTCTCCTTCTTCTTGTTCACCATCACTTCACTTTCTTTTCTCACAACAATCTCAACCTCTACCGTCACAGACACCTTAACCTCAACACAAATTCTCAAGACAAATCAGACCCTTGAATCTCTTCAGGGATCATTCGTTCTTGGTTTCTTCTCAGGAACATATTCCAACCTTTATTTAGCCATATGGTACAAAAACATCCCAGACACAGTTGTTTGGGTCGCAAATAGAGACAACCCTCTTCAAAATCCAACCGACAGCTTCCTCAAAATCACTGACGATGGAAACATAGTACTTCTCAATTCATCCTCAGTTTCCAACAACAACAACAACATCGTTTGGTCTTCGAATCAAACAAATGCTAAAAACCAAGTTCTTGTTCTTCAGCTTTTAGATACTGGAAATTTAGTACTCAAAGAATCAAACGGGAACGATACAACAAAATATTTATGGCAAAGCTTCGATTACCCAACAGATACTTTGCTACCAAGCATGAGTATAGGTTGGAACTTTGACAAAAACACGGAAAAACACTTAACATCATGGAAGAACACAGGTAAAGATCCTTCATCAGGAGATTATTCATTCAAAATTGATTTTCATGGTTTACCAGAAGTTTTCCTGTGGTATGATGATACCATAGTATATCGAAGTGGACCTTGGAATGGTGAAAGATTAAGCGGTATACCATATACAAGTTCAATAGTTTTAGATTTCTCATCAAACGAACACGGTGTAAACTACTCGTTTTCGTTCGGAAGTAACTCGATATTTTCAAGACTGATTGTGAGTTCTCATGGTCAACTTCTAAGTCTTACTTGGGATCAAAGTAGTAAAACATGGAAAATTATTTGTTATCCCGGAGGTGGACAAGATCTTTTTGTTAGATTAGCAGCTTCTGCTTCTGATTTAGATACAAATGTGAATTCTGATAGAAAAAGAAATGCTACACCAATCGCCGTAGCTAGAGTTGGAAAAAGAAATGTTACAGCAATCATCATAGCTACGGTCATAGTGGCAACATTTATTGTTGCTATTTGTTCCTATATCTTATGGTCACGATGTTCTAAATATCCAGGAGAAATCCATCAAGAAAACCAAGTTAAAGTAGAGGACCTTCCTGTATTTGAATTCAAAAACATTTTAACCGCAACAAATAACTTTGATTTAGCTAACAAGATTGGGCAAGGTGGTTTTGGTACAGTGTATAAGGGACAATTGCCTGGTGGATTAGAAATAGCAGTGAAAAGGCTTTCGAAAACTTCAGGACAAGGGTTAGAAGAATTTATGAATGAAGTGATTGTGATTTCAAAGCTTCAACATCGAAATCTTGTAAGACTTTTAGGTTGCTGCATCAAAGGGGAAGAAAAGATGTTGGTCTATGAGTACATGCCTAACAACAGTTTAGACTTTTATCTATTTGGGTACATGCTTTTTTTTGCTCTAAAAGAAATGGGGAAAAAGAGATACAAAGATACAATGAGAGGGATATAA 1509 0.3658 MRGGFFLSFFLFTITSLSFLTTISTSTVTDTLTSTQILKTNQTLESLQGSFVLGFFSGTYSNLYLAIWYKNIPDTVVWVANRDNPLQNPTDSFLKITDDGNIVLLNSSSVSNNNNNIVWSSNQTNAKNQVLVLQLLDTGNLVLKESNGNDTTKYLWQSFDYPTDTLLPSMSIGWNFDKNTEKHLTSWKNTGKDPSSGDYSFKIDFHGLPEVFLWYDDTIVYRSGPWNGERLSGIPYTSSIVLDFSSNEHGVNYSFSFGSNSIFSRLIVSSHGQLLSLTWDQSSKTWKIICYPGGGQDLFVRLAASASDLDTNVNSDRKRNATPIAVARVGKRNVTAIIIATVIVATFIVAICSYILWSRCSKYPGEIHQENQVKVEDLPVFEFKNILTATNNFDLANKIGQGGFGTVYKGQLPGGLEIAVKRLSKTSGQGLEEFMNEVIVISKLQHRNLVRLLGCCIKGEEKMLVYEYMPNNSLDFYLFGYMLFFALKEMGKKRYKDTMRGI* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4798 502 Pfam S-locus glycoprotein domain 221 290 IPR000858 GO:0048544
Psa1g4798 502 ProSiteProfiles Bulb-type lectin domain profile. 29 156 IPR001480 -
Psa1g4798 502 PANTHER - 16 289 - -
Psa1g4798 502 PANTHER - 293 480 - -
Psa1g4798 502 SUPERFAMILY Protein kinase-like (PK-like) 373 483 IPR011009 -
Psa1g4798 502 Pfam Protein tyrosine and serine/threonine kinase 395 478 IPR001245 GO:0004672|GO:0006468
Psa1g4798 502 CDD B_lectin 35 162 IPR001480 -
Psa1g4798 502 ProSiteProfiles Protein kinase domain profile. 393 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4798 502 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 289 - -
Psa1g4798 502 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 293 480 - -
Psa1g4798 502 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 228 IPR036426 -
Psa1g4798 502 ProSitePatterns Protein kinases ATP-binding region signature. 399 421 IPR017441 GO:0005524
Psa1g4798 502 SMART blect_4 35 162 IPR001480 -
Psa1g4798 502 Pfam D-mannose binding lectin 75 188 IPR001480 -
Psa1g4798 502 SMART tyrkin_6 393 502 IPR020635 GO:0004713|GO:0006468
Psa1g4798 502 Gene3D - 24 159 IPR036426 -
Psa1g4798 502 Gene3D Phosphorylase Kinase; domain 1 359 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4798 Psa-Chr1 359973809 360002692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4798 306 479 Receptor kinase-like Gene Family AT4G23190 45.143 2.18e-40 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa1g4798 B_lectin 1.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4798 - - gmx:100797331 319.701