Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4795 ATGAAGAAAAAATGTGAACTCTGCAAAAGTCCAGCAAAGTTGTTCTGTGAATCAGATCAAGCAAGTCTTTGTTGGGAATGCGATACTAGGGTTCACACTGCAAATTTCATAGTCACAAAACATCAAAGGTTTCTTCTATGTCATATTTGTCAATCTTTAACTGCTTGGCATGGAACCGGACCCAAGTTTGTTCCAACCATGTCTCTTTGTAACCACTGTGTTTCTGTTACCAACAATAACAATGATCATCGAGATGGCGACGATGATGATGACGACGATGACGATGAAGACACCGATGAAGATGATGATGAAGAAAATCAAGTTGTTCCATGGAAATCTACACCTCCACCACCAGTTTCTTCTTGTTCTTCAAACAGTGCAACTACCTATTAA 393 0.3944 MKKKCELCKSPAKLFCESDQASLCWECDTRVHTANFIVTKHQRFLLCHICQSLTAWHGTGPKFVPTMSLCNHCVSVTNNNNDHRDGDDDDDDDDDEDTDEDDDEENQVVPWKSTPPPPVSSCSSNSATTY* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4795 130 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Psa1g4795 130 PANTHER B-BOX TYPE ZINC FINGER PROTEIN 1 125 - -
Psa1g4795 130 CDD Bbox1_BBX-like 4 46 - -
Psa1g4795 130 SMART bboxneu5 1 46 IPR000315 GO:0008270
Psa1g4795 130 MobiDBLite consensus disorder prediction 85 106 - -
Psa1g4795 130 MobiDBLite consensus disorder prediction 81 130 - -
Psa1g4795 130 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Psa1g4795 130 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4795 Psa-Chr1 359650766 359651803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4795 1 108 C2C2-CO-like Transcription Factor Family AT4G27310 46.296 5.35e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa1g4795 zf-B_box 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4795 - - cam:101492786 171.785