Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4786 ATGGTGAAAAAATCAACAAAGGAGGAGGTTCCGCCGGACGATCTCCGATGCAGCCGCACCGACGGACGGCAATGGCGGTGCAAACGGAAAGCGATGGAAAACGTGAAGTTATGCGAGGTTCACTATCTGCAAGGTCGGCATCGGCAGAACAAAGAGAGGGTACCCGAGTCACTGAAACTTTCAAGGGACATGAAGGTGAAGAAGAAAAAGAAGAAAAACGACGTCGTTGAAATTAGGTCAAAGAACAAAAAGAAGAAGAAGAAGAAGAAGCATGTTGATGTGCAATTGGAGTTGATAAGGATGGTGTTGGAGAGAGAGGTTGATAAGAAGAAGAAGAATGTGAAGAGGAACAACAATGAGGAAACGGAATTGCATTACAGTGAGGCTGAATTGAGGAAAGAATTGCCTAATGGGGTTATGGAAATTGCTCCGGTTTCAACACCATGTGATGTGGAGTTTCAGAGTAATGGTAAAACGTTTATTGCGCCACGTTACTTCAGGTCCAAGAATGTTGATAGGAGGGTCCCTTTTGATAATTTGCAGGTTTTGAAGAAGTGTGGGAGGAAGAAGTGTCATTGTTGCCAGAGTAGTGATTCTGGGAATCTTATAAAGTGTTCCAACTGCCAGAAAGAGTTCTTCTGTCTTGATTGCATTAAACGAAGGTATTCCGAGACTCCTAATGAGGCTAAGATGGCGTGTCCAGTTTGTCGAGGATCTTGTACATGTAAATATTGCCGGGCAGGTCTTAGTAAAGACAATGAAAGTAAGGACCATTTGGCTGGGAGAAATAGTGTTGATAGGATATTGCATTTTCATTATTTGATCTGTATGCTCCTTCCTGTACTAAAACAAATAAGTGAGGAGCAGCGTACAGAGCTAGAAACAGAAGCGAAAAATAAAGGGAAAAATATTTCTGATATTCTCATCAAGCAAGTCGAATTTGGCCGCAATGAGAAAAATAACTGCAATTACTGCAACTCGTCGATTCTGAATCTTCATAGAAGCTGTCTGAGCTGTTCCTACAGTCTATGCTTAAGATGTTGCCAGGCATTGAGTCAGGGAAGCCCTTTTGAGCATATAAATTTGACAACTGAGATACCTGACAAAATGGACGCTTGCATTGATAACGAAAGTTACCTTTCGGATGATAATACTATTTCTAGCGATGATGTAACTGATACTTCACTGTTATCTGATTGGACTGGTTGTAATGGTACTACCGACAGTGTATCATGTCCTCCTACAGAGCTAGGTGGTTGTGGTAATACCCACCTTGACTTGAGATGTGTTTTTCCTTTAAGTTGGATCGAAGAAATGGAAACGAAGGCAGAAGAAGTAGTTTGCAGCTATGAAGTTCCTGAAATTTTGGATAAAAATTCAAGTTGTTCACTTTGTATTGACACAAATCATAAAACCAACAGACATAAGCAATCACAAGAAGCGGCTCGAAGAGAAGATTCTAATGATAATTGCTTATTTTATCCCACAGCTTTCACCATCAGTTCAGATCATTTCGAACACTTTCAGAAACACTGGGGAAAAGGCCATCCTGTAGTAGTCCGAGACGTGCTCCGAAGTACAAAAAACCTCAGTTGGGATCCTTTGGTCATGTTCTGTGATTATCTTGAGAAGAGCATTTCAGCATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTGTGAGGTGGAAGTTAACATTAGACAGCATTTTACTGGATCTCTTAGATGTCGACCTCAGAAAAATGATTGTCATGAGATGCTGAAATTAAATGGATGGTTATCTTCCGAACTATTCAAAAAACAGTTTCCAGATCATTTTGCTAAAGTAATTGATGCTCTTCCACTTCAAGAATACATGAATCCCAGGTCCGGTCTTCTGAATTTAGCGGCATATATGCCAGATGGGAGTGCAAAACATGACAAAGGACCATATGTCCATATTTCTTATGGCTGTACTGACAAGGAAGCTTGTTCCGTGCTAAATCTCTCATATGAACCTTATGATGTGGTTGATATTATGGCATATACCACAGATGCTCCTCTCTCTCCAGACCATCTTACTAAAGTAACTAAGTTATTGAAAAAGCATCAAACTCTGTGTCAAAGGGGGTCGCCAATGATTATTACTGAGCATGTAGAAGACAAAGAACAAAAGGAAACAGAGAGTATTGCCATGGAAGGAACCGACTTTTACAGGAGAGTCAATAGATCATCTTACATTAATGAAGTCAAAACAATACCTAGTCGGAGTTTAGAGGATAATGCTTCCAACAATGAAGAACCTGTTTCTTGTTCAGATTCAGATTCAGATTCCGAGAAAACACTAAGCTCTTTACCTCTCCACAAGGCAGTTCGAAGCACTGAAATGTATTCTGTTGCACAGTGGGATGTCTTCCGAAGACAGGATGAACCGAAGCTTCTAGAATATCTCAAAAGACATGCTGATGAATTTTCTTGTGCCAGTGAATATCACGGCAAGAAGATGGTTCAGCCAATTCTAGATCAGAGTATCTTTTTGGACACTGCTCACAAAATGAGACTGAAGGAGGAATTCAATATCGAACCGTGGACCTTTGTGCAACGTGTTGGAGAAGCTGTTATCGTTCCTGCCGGATGTCCATACCAGATTAAGAATTCTAAGTGTTGTGTGCATGTGGTATTGAAATTTATGTCTCCTGAGAATGTTGCGGAATGTATCCAATTGACTGATGAGATCCATTTGCTTCCTGAAGACCATATAGCAAAAGTAGACATGCTGGAGGCAAGGAAAATGGCTCTTAATAGTGTGGAGACGGCGATAAAAGAAATACATGAGCTCACTTCCAATCCCAAAACATGA 2847 0.4057 MVKKSTKEEVPPDDLRCSRTDGRQWRCKRKAMENVKLCEVHYLQGRHRQNKERVPESLKLSRDMKVKKKKKKNDVVEIRSKNKKKKKKKKHVDVQLELIRMVLEREVDKKKKNVKRNNNEETELHYSEAELRKELPNGVMEIAPVSTPCDVEFQSNGKTFIAPRYFRSKNVDRRVPFDNLQVLKKCGRKKCHCCQSSDSGNLIKCSNCQKEFFCLDCIKRRYSETPNEAKMACPVCRGSCTCKYCRAGLSKDNESKDHLAGRNSVDRILHFHYLICMLLPVLKQISEEQRTELETEAKNKGKNISDILIKQVEFGRNEKNNCNYCNSSILNLHRSCLSCSYSLCLRCCQALSQGSPFEHINLTTEIPDKMDACIDNESYLSDDNTISSDDVTDTSLLSDWTGCNGTTDSVSCPPTELGGCGNTHLDLRCVFPLSWIEEMETKAEEVVCSYEVPEILDKNSSCSLCIDTNHKTNRHKQSQEAARREDSNDNCLFYPTAFTISSDHFEHFQKHWGKGHPVVVRDVLRSTKNLSWDPLVMFCDYLEKSISAYENNKDLLEACLDWCEVEVNIRQHFTGSLRCRPQKNDCHEMLKLNGWLSSELFKKQFPDHFAKVIDALPLQEYMNPRSGLLNLAAYMPDGSAKHDKGPYVHISYGCTDKEACSVLNLSYEPYDVVDIMAYTTDAPLSPDHLTKVTKLLKKHQTLCQRGSPMIITEHVEDKEQKETESIAMEGTDFYRRVNRSSYINEVKTIPSRSLEDNASNNEEPVSCSDSDSDSEKTLSSLPLHKAVRSTEMYSVAQWDVFRRQDEPKLLEYLKRHADEFSCASEYHGKKMVQPILDQSIFLDTAHKMRLKEEFNIEPWTFVQRVGEAVIVPAGCPYQIKNSKCCVHVVLKFMSPENVAECIQLTDEIHLLPEDHIAKVDMLEARKMALNSVETAIKEIHELTSNPKT* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4786 948 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 7 944 IPR045109 GO:0032454|GO:0033169
Psa1g4786 948 SUPERFAMILY Clavaminate synthase-like 797 937 - -
Psa1g4786 948 MobiDBLite consensus disorder prediction 63 91 - -
Psa1g4786 948 PANTHER PROTEIN B160 7 944 - -
Psa1g4786 948 ProSiteProfiles JmjC domain profile. 614 909 IPR003347 -
Psa1g4786 948 Gene3D Cupin 496 918 - -
Psa1g4786 948 Coils Coil 100 120 - -
Psa1g4786 948 SMART cupin_9 605 909 IPR003347 -
Psa1g4786 948 MobiDBLite consensus disorder prediction 753 779 - -
Psa1g4786 948 ProSiteProfiles WRC domain profile. 11 55 IPR014977 -
Psa1g4786 948 Pfam JmjC domain, hydroxylase 791 889 IPR003347 -
Psa1g4786 948 Pfam WRC 12 52 IPR014977 -
Psa1g4786 948 ProSiteProfiles Zinc finger RING-type profile. 191 237 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4786 Psa-Chr1 359250916 359258373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4786 12 51 GRF Transcription Factor Family AT4G37740 52.500 3.42e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa1g4786 JmjC 1.2e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4786 K15601 - gmx:100799234 1117.06