Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4783 ATGGGAAGAACACCTTGTTGTGACAAGAATAATGGTCTCAAGAAAGGACCATGGACAACGGAAGAGGATGAAAAACTCATTCATTATATTCAAAAACATGGTTATGGCAATTGGAGGACACTCCCAAAAAATGCCGGTTTGCAAAGATGTGGCAAAAGTTGTCGTCTTCGTTGGACAAACTATCTCCGACCAGATATAAAACGTGGTCGATTTTCATTTGAAGAGGAAGAAACAATAATTCAGCTCCACAGCGTTCTTGGAAACAAGTGGTCTACGATTGCATCTCGATTACCCGGAAGAACAGACAACGAAATAAAGAACTACTGGAACACAAACATTAGAAAAAGGCTTTTGAGAATGGGAATCGATCCGGTAACACATAGTCCAAGACTTGATTTATTAGACCTCTCTTCAATTCTATGTTCATCTCTCTATGGCTCATCATCATCACAAATCAACAACTTCCAAACACTCCTTAGCATGCAACAACAGCAACCTCTGATAAACCCTGAGCTTCTAAAACTAGCTTCCTCACTTTTCACTACCTCATCACAACAACAACAACAACAAGATTATAGTAACAATCAACCTTGTAATCCCCAAATTCAAAACCAAGTTCCACCTTCACATTTTGTCCAATTCCAAGATCAAATCCAACAAGTACCTAGTACTAATTCTAATGTTTGTACTAGTGTTTCTCCTTCATTTCCTAATCATTCACATTTGTTTGAAACAAATGTGAATACAAATCCTTCAAATTTCACCGACCAAAGTTGTTACAACAATCAACATTCTGTTCCTGATATTGATTGGCTAGAAAATAATGGGTTTGGTTTAAGTACTTTTAAAGAGGATATTGATTATACCCCTCAATTATCAAACTATAATCAATATTATGGTTCTGATTATAATCAAAATCTTATGACTCATCAAACTTCAAACCAAATTCTATCAACACCATCTTCAAGTCCAACACCGATGAATTCGAACTCCACGTGTATCATTGGGAGCAATACAGAAGATGAGAAAGAAAGCTATGACAGTTGTAATAACAGAATGAAATTTGAAATTCCGTTGCATATTTTAGATTCCAATGATTTTATGTAA 1107 0.3577 MGRTPCCDKNNGLKKGPWTTEEDEKLIHYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSTIASRLPGRTDNEIKNYWNTNIRKRLLRMGIDPVTHSPRLDLLDLSSILCSSLYGSSSSQINNFQTLLSMQQQQPLINPELLKLASSLFTTSSQQQQQQDYSNNQPCNPQIQNQVPPSHFVQFQDQIQQVPSTNSNVCTSVSPSFPNHSHLFETNVNTNPSNFTDQSCYNNQHSVPDIDWLENNGFGLSTFKEDIDYTPQLSNYNQYYGSDYNQNLMTHQTSNQILSTPSSSPTPMNSNSTCIIGSNTEDEKESYDSCNNRMKFEIPLHILDSNDFM* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4783 368 Gene3D - 14 67 - -
Psa1g4783 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Psa1g4783 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Psa1g4783 368 PANTHER TRANSCRIPTION FACTOR MYB41 1 359 - -
Psa1g4783 368 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Psa1g4783 368 Gene3D - 70 117 - -
Psa1g4783 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 359 - -
Psa1g4783 368 SMART sant 67 115 IPR001005 -
Psa1g4783 368 SMART sant 14 64 IPR001005 -
Psa1g4783 368 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Psa1g4783 368 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Psa1g4783 368 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Psa1g4783 368 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Psa1g4783 368 CDD SANT 70 113 IPR001005 -
Psa1g4783 368 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4783 Psa-Chr1 359153783 359155630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4783 1 368 MYB Transcription Factor Family AT4G21440 53.600 2.65e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa1g4783 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4783 K09422 - gmx:778071 403.675