Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4778 ATGACGAGTTTCTCTTTCTTCCAACGTCTCTCTAGAACTTTCCTTGACAATCACAGAACCGTGAAGCTTGTTCTTCTTTGCACCGCCGTAAGTGGTGGTGGTATTGTGGCATATGGTGAGTTGGCTCCATCGGAAGCGGTTACCGATAGGAAAAAGGTGGTGGTGCTCGGAACTGGTTGGGCGGCAACAAGTTTTATGAAGAATCTGGATAATCCGAAGTATGAAGTTCAAGTGGTTTCGCCTCGTAATTATTTTGCATTCACTCCTTTGCTGCCTAGCGTGACGTGTGGAACAGTCGAAGCGCGCAGCATTGTTGAACCTGTTCGCAATATTTTTAGGAAGAAAAAGGTGGACGTGCAATTCAGTGAAGCAGAATGTTTCAAGATTGATGCTGAAAATAGAAAAGTTTATTGTCGATCTAATGCAAACAATAGTTTGGATGGGAAAGAAGAATTTGTTGTGGACTACGATTACCTAATCATTGGTGTGGGCGCTAATGTCAACACATTTAACACACCAGGAGTGGTGGAGAATTGTCATTTTTTGAAGGAAGTTGAAGATGCGCAGAAGATTAGAAGAACAGTTATTGACTGCTTTGAGAGAGCAAACTTGCCTGAAGTAAGCGAGGAAGAAAAGAAAAGAATTCTTCATTTTGCTATTGTTGGAGGTGGACCAACTGGAGTAGAATTTGCAGCCTCACTTCATGACTTTGTCAATGAGGATTTAATCCGTTTATATCCCGGGATAAAAAATTTAGTAAAAATTACACTTCTGGAAGCTGGAGATCATATTTTGAGCATGTTTGACAAAAGGATAACTGCTTTCGCTGAAGACAAGTTTCATAGAACTGGGATTGATGTGAAAACAGGATCCATGGTTGTGAAAGTATCTGAGAAAGAAATTTCCACTAAAGAGCTGAAAAATGGAGGAAATATTACTACAATTCCATATGGAATGGCTGTCTGGTCTACTGGAATTGGCACTCGTCCATTTATCAAAGATTTCATGTCACAAATTGGTCAGGCTAGCAGGCGTGCTCTTGCTACTGATGAATGGTTGAGAGTTGAAGGGTGCAAGAATGTATATGCACTGGGTGATTGTGCTACGATAAATCAGCGAAAAGTCATGGAAGATATTGCAGCAATCTTTAAGAAGGCTGACAAACACAATTCAGGAACACTTACGGTCAAAGAATTTCAAGACGTCATGAATGACATTCGTGTACGATATCCTCAAGTTGAGCAGTATCTAAAAAGTAAACAGATGCGCAACGTTGCTGATTTATTGAAGGAAGCAAGAGGAGATGTTAAAAAAGAAACAATTGAACTGAATATCGAAGAACTCAAAACAGCACTTTCCAAAGTGGATTCTCAGATGAAATTTCTCCCTGCAACAGCGCAGGTTGCATCTCAGCAAGGAATTTACCTAGCCAAATGTTTTAACCGAATGGAAGAGTGTGAGAAAAATCCCGAGGGTCCTCTCAGATTCAGGGGAGAAGGTCGTCATCACTTCAATCCCTTCCGGTACAAGCACTTAGGTCAGTTCGCTCCTTTGGGAGGAGAGCAGACAGCGGCTCAACTTCCTGGGGATTGGGTTTCAATTGGTCACAGCAGTCAATGGTTGTGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGTACGAGGGCGTTAGTAGTTACAGACTGGACACGACGTTTTATTTTTGGAAGGGACTCAAGTCGCATATGA 1731 0.4183 MTSFSFFQRLSRTFLDNHRTVKLVLLCTAVSGGGIVAYGELAPSEAVTDRKKVVVLGTGWAATSFMKNLDNPKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKKVDVQFSEAECFKIDAENRKVYCRSNANNSLDGKEEFVVDYDYLIIGVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPEVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLIRLYPGIKNLVKITLLEAGDHILSMFDKRITAFAEDKFHRTGIDVKTGSMVVKVSEKEISTKELKNGGNITTIPYGMAVWSTGIGTRPFIKDFMSQIGQASRRALATDEWLRVEGCKNVYALGDCATINQRKVMEDIAAIFKKADKHNSGTLTVKEFQDVMNDIRVRYPQVEQYLKSKQMRNVADLLKEARGDVKKETIELNIEELKTALSKVDSQMKFLPATAQVASQQGIYLAKCFNRMEECEKNPEGPLRFRGEGRHHFNPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFIFGRDSSRI* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4778 576 SUPERFAMILY FAD/NAD(P)-binding domain 51 269 IPR036188 -
Psa1g4778 576 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Psa1g4778 576 PANTHER NADH DEHYDROGENASE 4 576 IPR045024 GO:0003954|GO:0006116
Psa1g4778 576 SUPERFAMILY EF-hand 367 463 IPR011992 -
Psa1g4778 576 Coils Coil 438 458 - -
Psa1g4778 576 PANTHER NAD(P)H DEHYDROGENASE B2 4 576 - -
Psa1g4778 576 Pfam Pyridine nucleotide-disulphide oxidoreductase 51 377 IPR023753 GO:0016491
Psa1g4778 576 Gene3D - 422 575 - -
Psa1g4778 576 Gene3D - 43 421 - -
Psa1g4778 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 156 174 - -
Psa1g4778 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 217 235 - -
Psa1g4778 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 346 368 - -
Psa1g4778 576 SUPERFAMILY FAD/NAD(P)-binding domain 217 371 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4778 Psa-Chr1 359033421 359039215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4778 1 576 Chloroplast and Mitochondria Gene Families AT4G21490 71.870 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4778 K03885 - gmx:100802661 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g2518 7 178912020 178916519 Psa1g4778 1 359033421 359039215 PCT