Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4766 ATGGGGTTTTCGAATTCGGAGTTGCATGTACGAAGTTTTGTTACCTCCTTGATCGTGATTCTAATGGGAACTTTCTCTGTTGCAGACACTGACCCTGTTGATGTTGCAGCAATCAATAGTTTATATGTTGCTATGGAGTCACCACCTCTTCTAGGGTGGATGCCTGAGGGAGGGGATCCATGTTTAGACCTTTGGCTAGGTGTGGAGTGTGTCTTCTCCAACATAACTGCCATACGGCTCGGAGGCTTGAATTTGGGTGGAGAGCTGGGCAGTAATTTGGATTTTCCATCCATTATGGAAATTGATCTTAGCAACAACCACATTGGAGGAACCATTCCATTCACTTTACCGCCTACTCTTACAAGCTTGTCTCTCGCAAGAAATCGCTTAAATGGAAGCATTCCCGATGCCTTATCCTTATTATCCCAATTGTCAAGCTTGGATTTGGCCGATAACAACTTGACCGGCCAGCTGCCTTCCTCAATGGGGAGTTTATCATCTCTTACATCATTACTGTTGCAGAACAATCAACTCGGAGGAACCCTTTTAGTTTTGCAGGACATTCCTCTTCAAGAATTGAATATCGAGAATAATTTATTCTCCGGGCCAATTCCTCCGAACGTGTCTAACATCCCTAATTTGAAAAAAGATGGGAATCCGTTTAATACTACTATTATTCCGACACAGTCTGCTTTAGCCCCCTCACCTGTAGTTACCGGTCTATCTCCCGAAGAATCACCTTGGCATGTGGTTTATAGTCCTTCTGACTTCCCATCACCGGCACCTAGAAAAGTTAAGAAGTCTTTCCTAGCTAAGCACGGCTTTTGGATTGCCGGTGCCGGTACATTAATATTTATCGCTTTGGGAATTTGTGTTTGTACGGCGTGGTGCTGTAAGAGAAAGCCGAAAGATAAAAACTCTCAGAAGCTTGATCTGGAGGCTTTTCCAAATACTTTGCATAAACCTACTCACAATGACGCAGCTGAGAAAACATCGCGTTTCAATGAAGTTCCTAATAGGAGAACGAATTCGTTTCCAAAGGTTCAGGATGAACAAGAAGGATATGTCAACACAGTAACTGCAACTTCGGAATACAATAATGTTTCTAAACCTTCCCTTCTGCAGCCACCACCACATCCTCTGCCAATCATTCCTGTTGAGAAGGTCACTGTCAATTCTGCGGTAACTACCAAAGCAGCTGACAGAAAAATTATGACAAGTTCCATCAAAATGTATACCGTTGCATCACTTCAGCAATATACAAATAGCTTTTCCCAAGAAAATCTTATTGGTGAAGGCACTCTTGGATCTGTTTATAGAGCCGAGCTCCCCGATGGAAAGCTATTGGCGGTGAAGAAACTGGACACTAGAGCTTTCAAGGACCAAACCGATGAGCAGTTTCTTCAATTGGTATCTAGCATCTCAAAAATCCAGCATGTCAATATTGCAAAGCTTGTCGGCTACTGTGCTGAGTATAACCAACGATTACTTATATACGAATATTGTAATAATGGAACCCTCCAAGATGCACTTCACGGTGATGACGAACATTGTATTAAATTTCCATGGAATGAGCGCATTAAGGTTGCACTCGGTGCTGCAAGGGCTTTAGAATATCTGCATGAGAATTTCCAGCCGCCCATTGTACATCGAAATTTTAGGTCTGCTAATGTTCTCCTGAACGAAAAGTCGGAAGTGTGTGTCTCTGATTGTGGGTTAGGTCATTTGCTATCTTCTGGTGCTGTTGGTCAGTTATCTGGACGCCTCCTCACAGCTTATGGTTACAGCGCTCCAGAATTTGAGTCTGGAAGTTATACACAGCAAAGTGACGTGTTTAGTTTTGGAGTTGTAATGCTAGAACTTCTCACGGGAAGAAAATCGCACGACAGGTCACGGCCTCGCGGAGAGCAGTTTTTGGTGAGATGGGCAGTACCTCAACTCCATGACATTGATGCATTGTCAAAAATGGTTGACCCTCATTTAAATGGATCGTATTCTATGAAGTCCTTGTCACGTTTTGCAGATATTGTTTCGTCGTGTATTCAGCGTGAACCTGAGTTTCGGCCAGCTATGTCTGAAATTGTTCAGGATCTCTTGCTAACGATGTAG 2109 0.4324 MGFSNSELHVRSFVTSLIVILMGTFSVADTDPVDVAAINSLYVAMESPPLLGWMPEGGDPCLDLWLGVECVFSNITAIRLGGLNLGGELGSNLDFPSIMEIDLSNNHIGGTIPFTLPPTLTSLSLARNRLNGSIPDALSLLSQLSSLDLADNNLTGQLPSSMGSLSSLTSLLLQNNQLGGTLLVLQDIPLQELNIENNLFSGPIPPNVSNIPNLKKDGNPFNTTIIPTQSALAPSPVVTGLSPEESPWHVVYSPSDFPSPAPRKVKKSFLAKHGFWIAGAGTLIFIALGICVCTAWCCKRKPKDKNSQKLDLEAFPNTLHKPTHNDAAEKTSRFNEVPNRRTNSFPKVQDEQEGYVNTVTATSEYNNVSKPSLLQPPPHPLPIIPVEKVTVNSAVTTKAADRKIMTSSIKMYTVASLQQYTNSFSQENLIGEGTLGSVYRAELPDGKLLAVKKLDTRAFKDQTDEQFLQLVSSISKIQHVNIAKLVGYCAEYNQRLLIYEYCNNGTLQDALHGDDEHCIKFPWNERIKVALGAARALEYLHENFQPPIVHRNFRSANVLLNEKSEVCVSDCGLGHLLSSGAVGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDRSRPRGEQFLVRWAVPQLHDIDALSKMVDPHLNGSYSMKSLSRFADIVSSCIQREPEFRPAMSEIVQDLLLTM* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4766 702 Gene3D Ribonuclease Inhibitor 33 235 IPR032675 -
Psa1g4766 702 SUPERFAMILY Protein kinase-like (PK-like) 404 699 IPR011009 -
Psa1g4766 702 Gene3D Transferase(Phosphotransferase) domain 1 502 700 - -
Psa1g4766 702 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 141 699 - -
Psa1g4766 702 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 13 156 - -
Psa1g4766 702 Gene3D Phosphorylase Kinase; domain 1 386 501 - -
Psa1g4766 702 PANTHER LEUCINE RICH REPEAT KINASE 2 141 699 - -
Psa1g4766 702 PANTHER LEUCINE RICH REPEAT KINASE 2 13 156 - -
Psa1g4766 702 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Psa1g4766 702 Pfam Protein tyrosine and serine/threonine kinase 427 698 IPR001245 GO:0004672|GO:0006468
Psa1g4766 702 ProSiteProfiles Protein kinase domain profile. 424 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4766 702 SUPERFAMILY L domain-like 35 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4766 Psa-Chr1 358587285 358592732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4766 20 699 Strubbelig Receptor Gene Family AT4G03390 49.866 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Psa1g4766 PK_Tyr_Ser-Thr 7.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4766 - - gmx:100793423 927.932