Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4764 ATGGCTACCGCCCCATCCCGTGAACTCTCTCAGAAGGAAGCCGACATCCAAATGATGCTTGCCGCCGATGTTCACCTCGGCACTAAGAATTGTGACTTCCAAATGGAGCGTTACATTTTTAAACGCCGAAATGACGGGATTTACATTATAAATCTTGGGAAGACATGGGAGAAGCTCCAACTTGCTGCAAGGGTTATTGTTGCGATTGAGAATCCTCAGGACATTATTGTCCAATCTGCTAGGCCTTATGGACAGAGAGCTGTTCTCAAGTTCGCTCAGTATACTGGAGCTCATGCTATTGCTGGAAGGCACACTCCTGGAACCTTCACCAATCAGCTTCAAACTTCCTTCAGTGAGCCCCGTCTTCTCATTCTCACCGATCCAAGAACTGATCACCAGCCAATCAAAGAAGCTGCTCTTGGAAATATTCCCACAATTGCATTCTGTGACACGGATTCTCCTATGCGGTATGTTGATATTGGAATTCCTGCTAACAACAAGGGAAAGCATAGCATAGGTTGTCTCTTTTGGCTTCTGGCTAGGATGGTGTTACAGATGCGCGGTACTATTCGTCCAGGCCTTAAGTGGGATGTGATGGTGGATCTATTCTTCTATAGAGAACCTGAAGAGGCCAAGGATCAAGAGGAGGATGAAGTTCCTGCCCCAGATTATGCCATTGCTGACTTCAATGCAGCTGTTCCATCTGATGGTCAGTGGCCCGCTGCAATTGATCAACAACCATGGACAGATGCTGCTCCTCAGCCTATTCCAGCAGTTCTAGCAGTCAACTGGACAGCCCCAGAAGCTGTTGCAGGGGACTGGGGTGAAGCTGTTCCAGCACCACAACTAGTTCCCACACCCGGAATTGAATCTGTGCCAGCAACCGGCTGGGAATAA 897 0.4838 MATAPSRELSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKDQEEDEVPAPDYAIADFNAAVPSDGQWPAAIDQQPWTDAAPQPIPAVLAVNWTAPEAVAGDWGEAVPAPQLVPTPGIESVPATGWE* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4764 298 Pfam Ribosomal protein S2 118 183 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4764 298 Pfam Ribosomal protein S2 19 113 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4764 298 ProSitePatterns Ribosomal protein S2 signature 2. 120 144 IPR018130 GO:0003735|GO:0005840|GO:0006412
Psa1g4764 298 PANTHER 40S RIBOSOMAL PROTEIN SA 7 288 IPR005707 GO:0003735|GO:0006412|GO:0015935
Psa1g4764 298 Gene3D - 15 220 - -
Psa1g4764 298 TIGRFAM uS2_euk_arch: ribosomal protein uS2 11 207 IPR005707 GO:0003735|GO:0006412|GO:0015935
Psa1g4764 298 PANTHER 40S RIBOSOMAL PROTEIN SA 7 288 - -
Psa1g4764 298 SUPERFAMILY Ribosomal protein S2 11 201 IPR023591 -
Psa1g4764 298 CDD RPS2 19 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4764 298 PRINTS Ribosomal protein S2 signature 16 34 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4764 298 PRINTS Ribosomal protein S2 signature 46 55 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4764 298 PRINTS Ribosomal protein S2 signature 95 112 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4764 298 PRINTS Ribosomal protein S2 signature 120 137 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4764 298 PRINTS Ribosomal protein S2 signature 137 148 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4764 298 PRINTS Ribosomal protein S2 signature 158 172 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4764 298 Hamap 40S ribosomal protein SA [rps-0]. 3 242 IPR027498 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4764 Psa-Chr1 358517934 358520268 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4764 1 298 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.090 1.07e-149 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4764 K02998 - gmx:100805318 526.168