Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4763 ATGGCTTCTGCTCCTTCGTCGTCTTCTCCTTCTTCTTCCTCCAAACTATGCTTCAATTCTGACTGTAAAGACTTCAAGTCTGAAAGACCTAAGAAAGGTTGGAGATTACGTACCGGTGACCTAGCCGAACTCTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTTCACGCAAATGCTTCCGGTTGGAGGAATTGTGAGACTTGTAGGAAGCGAATTCATTGTGGGTGTATTATTTCAAGTAACACCTTCGTGTTGTTGGATCCAGGAGGAATTGAGTGTTTTACATGTGCCCGCAAAAATATTATTTTGCCATCTAATCTGCCATGGCCACAATCTTTATCTCTTCAAAATCGTTTATCGGAGAGACTTAGAGACATATCTGCCAAAAATTGGAGTCAGTTAGCTGGATCAGGACCTGTACCCTGGAAGCAAGCACCCAGTTTATTCAATTCAGCTTCTTCATCTGACCAGCATCCAGACGGGCACTCTGTCGTTGAGTTATCAAATAACTTTGACACAAATTACGGCGGCAATGAAAGGTTACCCACCTCATCCTTGGAAAAGAAAAATGAAGATTTTTCTGGAATATCGGCTAATTGGAATGTCAAACTTGGTTCAAGGGAAATGGTCCTTATGAATGGAATGAGGAATGACGACAAATCAAGTCCGTGTTTAAATATGTGCCAACAGCATCATTCCCTGAAGGAAGACTCATCTTCTCAGCCATTTGGTTTATCTGTACCTTATTCTTCCCCAAATGAAAGAAATGGTCTGATTGGGGTAACTGGAATTCATTCACAGCAAACTCCACCTCATCCAGGCAAGCAATTTAGTGGCACTATGCATTTAGCTCTTGACTCATCAGGTGAAGCTCAGGTTCGCAATGGGCGACCTCGAGCAGATGCCCGAGGAAGAAGCCAGTTGTTGCCACGTTACTGGCCCAGGTGTACTGAGCTGGAGCTACAACAAATATCTATAGACTCTAATTCTGTAATAACTCCCTTGTTCCAAAAAACTTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTGGTGCTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGAAAGGAATGGATATTTCAGTTCCGCTTCTGGCCGAATAACAACAGCAGAATGTATGTTTTAGAGGGTGTAACTCCATGCATACAATCCATGCAGTTGCAAGCAGGTGACACGGTAACATTTAGCCGGTTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTACAAGTGCCATACCACCTGATCAGGATAATGAAGCTAATAAGACTGGAAATGGATTTTCTGCACATGAAGTTGAATTGGGTGATCCTAGTTCTTGGTCAAAAATTGATAAGTCGGGATACATTGCAAAAGAAGCACTGGGGAGCAAATCTTTAATCTCTAGAAAGAGAAAGAACAACATATTGGGTTCAAAAAGTAAACGTCTAAAAATTGAAAATGAGGATATAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGCCTGCTCCGCCCCCCTCCTAACCATGTTCCAAGCATTGTGGTGATTGAAGGCTTTGAGTTTGAGGAATATGAGGATGCTCCAGTGCTTGGGAAGCCAACTATTTTCACTAGTGATAATATGGGTGAAAGGATTCAGTGGGCTCAATGTGAAGATTGTCTGAAGTGGCGCAAATTGCCAGCATGTGCACTTCTTCCATCAAAGTGGACGTGTTCTGATAATTCTTGGGATCTAGAAAGGTCTTCTTGTTCAGTCGCACAAGAGCTTACAGCAGAACAACTTGAGAATTTGTTACCCCCTTGTAATTCAGCTGTTTCCAAGAAAATGAAGGCTGCTAAGCAGGATCCTGATCATGCTGAAGCTTTGGAGGGACTTGATACACTTGCAAATCTAGCTATCCTAGGGGAAGGGGAGGCTCTCCCGGCATCTTCCCAGGCCACAACAAAACACCCACGACATAGACCTGGCTGCTCCTGCATTGTGTGCATTCAGCCTCCAAGTGGAAAGGGCCCCAAGCATAAGCAGACGTGCACATGTAATGTCTGTCTAACGGTGAAACGTCGTTTCCGTACCCTTATGTTACGGCGTGAGAAGAAACAATCAGAAAGAGAAGCAGAGACAACACGGAAAAAGATGCAGCAACAGAATTCCCAGCAATTGCCTTCATCCGAGATTATGCTTGATGATGATTCTTTGCATAATAGTAATAATACAGGTGATAGTAGCCCAAACATGAACAAGGAGGGTAATGACGGTTCTGATGATGATCCTCACCGGATAAAATCATCTGTGTCTCCGTTTAAAGGCAGAATTGACCTCAATATCCAGCCAGAGCGAGAAGAAGAATTGTCACCTGGTTCAGATTCTGGTGGTGTAATGAAGCTGCTCCACGATGCTACTGAGATATGCCTCAAGCAGCAGCAGAATGTTTTGAACTCTGGCACTGGAGATTCATCAGGTAGTCAGTCACAGCAGGTAGGAAATGTAGTGAGGGAAGAGAAGCTTAGCAATGGTGTTATCCACGGTAGCAGTAGTCATAATGCAGATAAGGAACACACTCAGTCTTTGTCTATGAACGTGTGA 2667 0.4387 MASAPSSSSPSSSSKLCFNSDCKDFKSERPKKGWRLRTGDLAELCDRCGSAFEEGRFCDIFHANASGWRNCETCRKRIHCGCIISSNTFVLLDPGGIECFTCARKNIILPSNLPWPQSLSLQNRLSERLRDISAKNWSQLAGSGPVPWKQAPSLFNSASSSDQHPDGHSVVELSNNFDTNYGGNERLPTSSLEKKNEDFSGISANWNVKLGSREMVLMNGMRNDDKSSPCLNMCQQHHSLKEDSSSQPFGLSVPYSSPNERNGLIGVTGIHSQQTPPHPGKQFSGTMHLALDSSGEAQVRNGRPRADARGRSQLLPRYWPRCTELELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKATSAIPPDQDNEANKTGNGFSAHEVELGDPSSWSKIDKSGYIAKEALGSKSLISRKRKNNILGSKSKRLKIENEDIIELKITWQEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPTIFTSDNMGERIQWAQCEDCLKWRKLPACALLPSKWTCSDNSWDLERSSCSVAQELTAEQLENLLPPCNSAVSKKMKAAKQDPDHAEALEGLDTLANLAILGEGEALPASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKMQQQNSQQLPSSEIMLDDDSLHNSNNTGDSSPNMNKEGNDGSDDDPHRIKSSVSPFKGRIDLNIQPEREEELSPGSDSGGVMKLLHDATEICLKQQQNVLNSGTGDSSGSQSQQVGNVVREEKLSNGVIHGSSSHNADKEHTQSLSMNV* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4763 888 MobiDBLite consensus disorder prediction 866 888 - -
Psa1g4763 888 Pfam B3 DNA binding domain 342 441 IPR003340 GO:0003677
Psa1g4763 888 Gene3D - 573 626 - -
Psa1g4763 888 MobiDBLite consensus disorder prediction 841 888 - -
Psa1g4763 888 Pfam CW-type Zinc Finger 574 616 IPR011124 GO:0008270
Psa1g4763 888 ProSiteProfiles B3 DNA-binding domain profile. 342 443 IPR003340 GO:0003677
Psa1g4763 888 CDD B3_DNA 340 441 IPR003340 GO:0003677
Psa1g4763 888 ProSiteProfiles Zinc finger CW-type profile. 569 619 IPR011124 GO:0008270
Psa1g4763 888 SMART B3_2 342 442 IPR003340 GO:0003677
Psa1g4763 888 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 12 818 - -
Psa1g4763 888 MobiDBLite consensus disorder prediction 841 859 - -
Psa1g4763 888 Gene3D - 320 446 IPR015300 -
Psa1g4763 888 MobiDBLite consensus disorder prediction 723 738 - -
Psa1g4763 888 MobiDBLite consensus disorder prediction 721 752 - -
Psa1g4763 888 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 12 818 - -
Psa1g4763 888 MobiDBLite consensus disorder prediction 777 793 - -
Psa1g4763 888 Coils Coil 723 746 - -
Psa1g4763 888 SUPERFAMILY DNA-binding pseudobarrel domain 339 444 IPR015300 -
Psa1g4763 888 MobiDBLite consensus disorder prediction 764 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4763 Psa-Chr1 358464439 358473803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4763 272 727 B3 DNA Binding Superfamily AT4G32010 55.098 1.35e-161 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa1g4763 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4763 - - gmx:100807252 1539.24