Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4762 ATGAATGACTTGTTTTCAAGCTCCTTCAAGAAATATAGTGACTTGAAGGAGCAAGCTCACATGGATGATATAGAAGCAGGAAAAGAAAGCATCAACCTTGATAAATTCTTTGAGGATGTTGAGAATGTGAAAGAAGACATGAGGCTAGTTGAGAAGCTTTATAGAAAATTACAAGAGGCAAATGAAGAAAGCAAAATTGTCCATAATGCTAAAACAATGAAAGATCTTCGAGCAAGGATGGATCAAGACGTTGAACAGGTTCTCAAAAGAGTTAAAATCATAAAGGGTAAGCTCGAAACATTAGAACGTTCGAATGCCGCGAATAGAAAGATTGCAGGGTGTGGTCCAGGTTCATCGGCAGATAGAACAAGAACTTCAGTGGTTAGTGGATTGGGAAAAAAACTCAAAGATATGATGGATGATTTTCAAGGGTTAAGAGCAAGAATGCAACAAGAGTACAAGGAAACAATTGAAAGAAGGTATTTTACAATAACAGGTGAGAAAGCTGATGAAGACACAATTGAGAATTTGATATCAAGTGGAGAAAGTGAAACTTTTATGCAGAGAGCAATTCAGGAACAGGGTAGGGGTCAAATTATGGACACGATATCTGAGATTCAAGAAAGACATGATGCTGTTAAGGAAATAGAGAAAAACTTGATTGAATTACATCAAGTTTTTCTGGACATGGCAGCACTTGTTGAATCACAAGGACAACAACTGAATAACATAGAGAGTCATGTCGCACATGCTAGTTCTTTTGTTAGGAGAGGTACTGAACAACTTCACGAGGCTAGAGAGCATCAAAAGGATTCAAGGAAATGGACATGTTATGCCATACTTCTTGGTCTTGTTCTCATCATTGTGATCCTGTTTCCATTCTTGATGTCAATTCTACCTCACTTGATACTGTAG 915 0.376 MNDLFSSSFKKYSDLKEQAHMDDIEAGKESINLDKFFEDVENVKEDMRLVEKLYRKLQEANEESKIVHNAKTMKDLRARMDQDVEQVLKRVKIIKGKLETLERSNAANRKIAGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQQEYKETIERRYFTITGEKADEDTIENLISSGESETFMQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLHEAREHQKDSRKWTCYAILLGLVLIIVILFPFLMSILPHLIL* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4762 304 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Psa1g4762 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Psa1g4762 304 SMART SynN_4 28 154 IPR006011 GO:0016020
Psa1g4762 304 Gene3D - 192 295 - -
Psa1g4762 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Psa1g4762 304 Coils Coil 40 70 - -
Psa1g4762 304 Coils Coil 84 104 - -
Psa1g4762 304 CDD SynN 33 190 IPR006011 GO:0016020
Psa1g4762 304 Pfam SNARE domain 240 291 IPR000727 -
Psa1g4762 304 Gene3D - 33 160 - -
Psa1g4762 304 PANTHER SYNTAXIN 10 296 IPR045242 -
Psa1g4762 304 PANTHER T-SNARE-RELATED 10 296 - -
Psa1g4762 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Psa1g4762 304 SMART tSNARE_6 198 265 IPR000727 -
Psa1g4762 304 CDD SNARE_syntaxin1-like 202 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4762 Psa-Chr1 358457722 358459859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4762 1 304 SNARE and Associated Proteins AT1G61290 77.632 5.06e-180 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4762 K08486 - gmx:100818999 547.354