Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4731 AGTAGTCACGAGGATTCTTCATTGAAAGACGTTTCACCCGGTGAATCTGGGACCCATGATGATTTTTTACTTCAAAATGGGAATTCTTCCATGCTTGACTACGAACATGAAAACCTAGCACCTTCATCACAGACCTGCTATTCCCCAAGTGCTTTTGCTGGTGGTTACAGGGACTCATTCTCTGTTGCTGAAAGTGATGAAACTTGCTATGCAGAAAGGGCGGGAGTTTCTGAACGTGAGGTGCCTTTTTACAGTACAGACACAAGTTTTGCTGAAGCAAATTCAAATGCTGTAACTGTTTGTAGAGATAATTTGAACTCGAGCCTGTGGAAGGGTCACAATACTAGCCAAATCAAGCATGTGGCAGATGATGTAGAATCTGAATATGCTTCACACAGCTCTATCATTGACAATGTTGATGGAACTTTTGCAAATTATGGAACAGCTTTGAAAGACATTATTGGAGTTTCTAGGCAGCAGGAAAATGACTCATGTACAACTTTTGAAATGCCGTTTGTGGATGTTGACATGCCTACACATTTTGGAGTGGATGTTGACATGTCTACACATTTTAGAACTTCAACTGATTCTACTTTTTGTCATGGTTCCGATGCTCCTAGTGATTTTAGTGGCTACTATCCATCTTTGAATTGTTACCAAGGTATAGATGTTAGACCTGTTGTTACTGACAGTTCTGCTTATTTACCTAATGGTGTTTGTCCTGAATTCTGGAAAAATGAAGAGACAACGGGGAACATGAAGGTTGAAAAAATGGAGTTTTTAACTGATACTGCAAATATGATTGGCGGCATGCATTTGAATACCAGTGGTCAGATCCCTTTTCAGGACAGGCAATTTATGCCAACAGATAGTGAATATCCTTCATTTTTTCCTGGTAATGTTGTATTTGAAGACGGTGAATCAGTGCAACAGTCATCTTGTGCTCCATATATTTCTTGTGAAGGCCAGTCATTTAATGTCAAAGCTGAAGGAGATGAAATGGGCACGCCTTTCCAAAATACTTTTCACATTGACCATGCAGAGTTAAATGCTGGTCTTGGGGTGAAACAATTACCTGGAAATACAGAAAATTTGAATTTCAGATCCTTAGACAAATCTCTTTCTATTGCCCGGGCATCGATTACCAATGGGAAGCAGTATAATTGTGGTATGAGCAAACTAGAGAGTAAGCCAAGTGAATATAGAAGTATTGATGATTCTCAACTGTCCAAAAGAAGTACTGAGGGATCCAATGACGAAGATGACTGCGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTACAAGTCGATCTGCTGAACTCAATAATTCTCTTAATATGTCACAATCTTCTAGATTTGACTATACCAAACCGTATATGTCGGGAGGCACAAAACCAAAGCCACGTGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTGTCTCAGCCAAAGTCAGAAGTTAGTCCCCCAGATGGGCTGTTGGCAGTTCCTCTTTTACGTCACCAGAGAATTGCTTTATCGTGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTTCTTTAATACTAAAGGAAAGGCCTCCATTGCTCAAGACATGCAAAAGTGCACAAAAAAGTGTATTAGAAACCTTGGATTTGGATGATGACCCACTTTCTGAGAATGGTGTAGTGAAAAAGGAATCTAACGTGTGTCAAGATACATGTAACAGAAATGCAATCACAGGCCATCTGCAGGAACCCTTGTTGTTTTGTCAAACTAGTGTCCTGCGACAGTGGGCTGACGAACTGCATAATAAAGTAACCTGCAAAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGCAGTCGAACCAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTTTGACTACTTATTCAATTGTTAGCATGGAGGTCCCTAAGCAGCCACTGGTTGACAAAGATGACGTAGAAAAAGAAACTTATGAAGATCATGCTATGCCGAGCTCACTTCTTGATGGGGAGCCTATTATATCTTTGCCACCTAAATCTGTGGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGAGATTTCTATTCCAAGCTAGAGGCCGATTCACGTGCACAGTTTCAGGAATACGCCGATGCTGGTACTGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCCTGCGACCACCCTCAGCTTGTTAAGCGTTACAATTCTACTACTCTCTGGAAATCTTCAGTTGAGACGGTCATGAAGCTTCCTCGGGAAAAACAACTATTTCTTTTGAAATGTTTAGAGGCTTCCTTGGCTCTCTGTGGTATCTGTAATGATGCTCCTGAAGATGCTGTTGTTTCAGTCTGTGGTCATGTTTTCTGTAACCAGTGCATTTGTGAACATCTAACTGGTGAGGACAATCAGTGCCCTGCCACAAACTGCAAAACTCGACTTAGCATGTCTTTAGTGTTTCCCAAAGCCACACTGAACAGTTCTTTATCTGATCAGTCTTGTGATCTTTTGCTTGGTTACTCTGGTTCTGAGGTCGAGGATTCTGAATCTTGTTCTCAGACTAAGCCATATAATTCTTCCAAAATAAAAGCCGCACTTGAGGTGTTGCAGTCATTGTCTAAGCCCCAATGCTGTACTTCCCAAGAAAATTGTGTGCTGAGCACTTCTAAGGAAAGTACTGATTGCAGCTCCACTTCTGCTGACAGTGGAAAATCTTCTAGCGATGTTCCCAAAAAGAAAACTATGTTAATTGAGAAAAGCTCTAACGGTGCAATTGGTTCTCTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGGGGATGCTAGATTTACTTGAAGCGTGTCTTAAAAATTCTTCAATTCAGTATAGAAGACTTGATGGAACAATGTCTGTCATTGCAAGAGATAAAGCTGTTAAAGATTTTAACACACTCCCTGAGGTAACAGTTATGATAATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAACATGGTGGCAGCCTGCCATGTTCTCATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAAGCCATAGACAGAGCGCATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGTTTAACTGTCAAAGATACGGTCGAAGACCGCATTTTAGCTCTGCAGCAAAAGAAGCGAAAGATGGTTGCATCTGCATTTGGAGAGGATGAAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3339 0.4118 SSHEDSSLKDVSPGESGTHDDFLLQNGNSSMLDYEHENLAPSSQTCYSPSAFAGGYRDSFSVAESDETCYAERAGVSEREVPFYSTDTSFAEANSNAVTVCRDNLNSSLWKGHNTSQIKHVADDVESEYASHSSIIDNVDGTFANYGTALKDIIGVSRQQENDSCTTFEMPFVDVDMPTHFGVDVDMSTHFRTSTDSTFCHGSDAPSDFSGYYPSLNCYQGIDVRPVVTDSSAYLPNGVCPEFWKNEETTGNMKVEKMEFLTDTANMIGGMHLNTSGQIPFQDRQFMPTDSEYPSFFPGNVVFEDGESVQQSSCAPYISCEGQSFNVKAEGDEMGTPFQNTFHIDHAELNAGLGVKQLPGNTENLNFRSLDKSLSIARASITNGKQYNCGMSKLESKPSEYRSIDDSQLSKRSTEGSNDEDDCDVCIIEDISHPAPTSRSAELNNSLNMSQSSRFDYTKPYMSGGTKPKPRDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTISLILKERPPLLKTCKSAQKSVLETLDLDDDPLSENGVVKKESNVCQDTCNRNAITGHLQEPLLFCQTSVLRQWADELHNKVTCKANLSVLVYHGSSRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDVEKETYEDHAMPSSLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPQLVKRYNSTTLWKSSVETVMKLPREKQLFLLKCLEASLALCGICNDAPEDAVVSVCGHVFCNQCICEHLTGEDNQCPATNCKTRLSMSLVFPKATLNSSLSDQSCDLLLGYSGSEVEDSESCSQTKPYNSSKIKAALEVLQSLSKPQCCTSQENCVLSTSKESTDCSSTSADSGKSSSDVPKKKTMLIEKSSNGAIGSLGEKAIVFSQWTGMLDLLEACLKNSSIQYRRLDGTMSVIARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVASAFGEDETGGRQSRLTVDDLKYLFMM* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4731 1112 Gene3D - 477 671 IPR038718 -
Psa1g4731 1112 Pfam Helicase conserved C-terminal domain 957 1054 IPR001650 -
Psa1g4731 1112 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 686 1111 - -
Psa1g4731 1112 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 367 682 - -
Psa1g4731 1112 MobiDBLite consensus disorder prediction 1 16 - -
Psa1g4731 1112 MobiDBLite consensus disorder prediction 398 417 - -
Psa1g4731 1112 Gene3D - 850 1111 IPR027417 -
Psa1g4731 1112 ProSiteProfiles Zinc finger RING-type profile. 798 837 IPR001841 -
Psa1g4731 1112 SMART ring_2 798 836 IPR001841 -
Psa1g4731 1112 SMART helicmild6 971 1054 IPR001650 -
Psa1g4731 1112 MobiDBLite consensus disorder prediction 1 21 - -
Psa1g4731 1112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 791 848 IPR013083 -
Psa1g4731 1112 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 948 1107 IPR001650 -
Psa1g4731 1112 CDD SF2_C_SNF 952 1064 - -
Psa1g4731 1112 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 367 682 - -
Psa1g4731 1112 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 686 1111 - -
Psa1g4731 1112 SUPERFAMILY RING/U-box 795 849 - -
Psa1g4731 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 664 IPR027417 -
Psa1g4731 1112 Pfam Zinc finger, C3HC4 type (RING finger) 798 834 - -
Psa1g4731 1112 ProSitePatterns Zinc finger RING-type signature. 813 822 IPR017907 -
Psa1g4731 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 1111 IPR027417 -
Psa1g4731 1112 Pfam SNF2-related domain 522 663 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4731 Psa-Chr1 357349552 357357220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4731 425 680 RAD5 or RAD16-like Gene Family AT1G61140 53.875 1.96e-70 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa1g4731 SNF2_N 1.1e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4731 - - gmx:100792901 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4731 1 357349552 357357220 Psa1g4731 1 357349552 357357220 ECH