Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4718 ATGTCAACACATGAAAGAAAAGCAAGTATTAGGGAATTCTACGCGATCATATATCCGTCTTTAATACAACTTGAAAAAGGTGTCACTGATGCGGAAGATAAAAAACAGAAGGTTGTATGCATGGAGAGGTATCGTAGAAGAGATGATGCGGGGCACAAACATTCCTCAGACATAGACCTTGAAAGAGAAGAAGAATGTGGAATATGCATGGAGATGAATAGTAAGATTGTATTGCCCAACTGCAACCATGCCATGTGCCTCAAATGTTACCATGAATGGAGAGCAAGATCACAATCTTGCCCGTTTTGTCGTGACAGTCTTAAAAGAGTGGACTCGTGCGATCTCTGGGTATTGACCGATAGTCGAGATGTAGTAGACATGGAAACAGTGACAAGGGAGAATCTCCGAAGACTTTTCATGTACATAGATAAGTTACCTTTGATCATTCCCGACTCCCTTTTCGACCCTTATGACTCTCACCTAAGATAA 489 0.4131 MSTHERKASIREFYAIIYPSLIQLEKGVTDAEDKKQKVVCMERYRRRDDAGHKHSSDIDLEREEECGICMEMNSKIVLPNCNHAMCLKCYHEWRARSQSCPFCRDSLKRVDSCDLWVLTDSRDVVDMETVTRENLRRLFMYIDKLPLIIPDSLFDPYDSHLR* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4718 162 SMART ring_2 66 103 IPR001841 -
Psa1g4718 162 PANTHER RING FINGER PROTEIN 41, 151 1 162 - -
Psa1g4718 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 114 IPR013083 -
Psa1g4718 162 SUPERFAMILY RING/U-box 56 109 - -
Psa1g4718 162 ProSitePatterns Zinc finger RING-type signature. 81 90 IPR017907 -
Psa1g4718 162 Pfam Zinc finger, C3HC4 type (RING finger) 63 109 - -
Psa1g4718 162 ProSiteProfiles Zinc finger RING-type profile. 66 104 IPR001841 -
Psa1g4718 162 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4718 Psa-Chr1 356550745 356551773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4718 54 107 C3H Transcription Factor Family AT5G47610 40.678 5.81e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4718 K25840 - vvi:100244841 304.679