Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4716 ATGCATTGTTTTTCTCTACAATTTATTATTTGTATTATCGTTTTATTAAAAGTTAATAATGCAGGGCAAATGCCAGGGATTGCTCATACAATTCAAGGAGCTACACACAATTTCTCACCATATGGGATGTCACAGATTGGAGCTCTTTCCTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCACGCTCGGCGAGTGTATGTTGGCGGGCTCCCTCCTTTTGCTAACGAGCAGGCAATTGCATCTTTCTTTAGCCATGTCATGATTGCTATTGGGGGAAATTCTGCTGGATCAGGTGATTCGGTTGTCAATGTCTACATTAATCACGAGAAGAAATTTGCGTTTGTGGAGATGAGAACCGTTGAAGAAGCTAGCAATGCAATGGCTTTAGATGGAATAGTATTTGAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACTGACTATAACCCTTCGTTAGCTGCAGCTCTAGGTCCTTGCCAGCCCAGTGCAAACCTCAACTTATCTGCTGTTGGACTTACTGCAGGTACAATTGGTGGAGCCGAGGGACTTGATCGCATCTTTGTGGGTGGGCTGCCATACTACTTTACTGAAGCACAAATGAGAGAATTGCTTCAAGCTTTTGGTCCTCTCCGAAATTTTGACATAGTTAGAGATAAAGAAACGGGAAACTCTAAAGGATATGGTTTCTGCATTTATCAGGATCCAGCAGTAACAGACATTGCTTGCGCCTCTCTTAATGGCCTTAAAATGGGAGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGGACATTCTAAACCAGAAGAGGATAACATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAATAGCTTTGGAAGTGGTTGGACTAAATATTCCAGGAGTTGAAAGAGGCCCATCAAACGAAGAAAGCCCCACTAAAGTTGTATGTTTAACTCAGGCCGTCACTACCGAACAGTTAAATGATAATGGAGAATATGAAGAAATATTGGAAGACATGCGGGATGAGTGCTGCAAATTTGGGACCTTGATGAATGTTGTTATTCCTCGTCCAAATCCAAATGGAGAGCTGTCTGCAGGTATTGGAAAGGTGTTCTTGGAATACTCAGAGTGTAGTTCTTCTTTAGCTGCAAAAAATGCTCTAAATGGTAGGAAATTTGGGGGCAATATTGTTACTGCTGTTTATTATCCAGAGGAAAAATATCATAGTATGGAATATGATTTATAA 1242 0.4171 MHCFSLQFIICIIVLLKVNNAGQMPGIAHTIQGATHNFSPYGMSQIGALSLMQVQPMTQQATRHARRVYVGGLPPFANEQAIASFFSHVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVAVRVRRPTDYNPSLAAALGPCQPSANLNLSAVGLTAGTIGGAEGLDRIFVGGLPYYFTEAQMRELLQAFGPLRNFDIVRDKETGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKPEEDNIFARAQQHIAMQKIALEVVGLNIPGVERGPSNEESPTKVVCLTQAVTTEQLNDNGEYEEILEDMRDECCKFGTLMNVVIPRPNPNGELSAGIGKVFLEYSECSSSLAAKNALNGRKFGGNIVTAVYYPEEKYHSMEYDL* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4716 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 264 IPR000504 GO:0003723
Psa1g4716 413 Gene3D - 180 282 IPR012677 -
Psa1g4716 413 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 19 411 IPR006529 GO:0003723|GO:0005634|GO:0006397
Psa1g4716 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 257 IPR000504 GO:0003723
Psa1g4716 413 CDD RRM3_U2AF65 311 399 - -
Psa1g4716 413 PANTHER RNA-BINDING PROTEIN 16 412 - -
Psa1g4716 413 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 16 412 - -
Psa1g4716 413 SMART rrm1_1 187 260 IPR000504 GO:0003723
Psa1g4716 413 SMART rrm1_1 67 145 IPR000504 GO:0003723
Psa1g4716 413 CDD RRM1_U2AF65 65 147 - -
Psa1g4716 413 CDD RRM2_U2AF65 186 262 - -
Psa1g4716 413 Gene3D - 307 412 IPR012677 -
Psa1g4716 413 SUPERFAMILY RNA-binding domain, RBD 66 151 IPR035979 GO:0003676
Psa1g4716 413 SUPERFAMILY RNA-binding domain, RBD 187 404 IPR035979 GO:0003676
Psa1g4716 413 Gene3D - 61 162 IPR012677 -
Psa1g4716 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 149 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4716 Psa-Chr1 356433056 356440654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4716 180 262 Eukaryotic Initiation Factors Gene Family AT1G71770 25.301 2.33e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4716 K12837 - cpap:110817812 590.882