Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4712 ATGAGGTGTAGTAGCTGTTTTAGAACATTTTCTGTAAAGAAGGAAAAAGAACATCCTTCTAATTATATTTCCAGTGAAATTGAAGGCTATTCTTTGGATAATCTTAAGCATTTTTCTGATAAAGAACTGAGATTGGCAACTGATAATTATCATTTAAGCAATAAGATTGGAAGAGGAGGATTTGGTACTGTTTACAAGGGGACATTAAAAAATGGAAGAAAGATAGCAGTGAAGCCTCTTTCTGTTGGATCAAAGCAGGGAGTTCGCGAATTTTTGACAGAAATTACAACCTTATCAAATGTTAAACATTCAAACCTTGTTGAATTGGTTGGATTTTGCATTCAAGGGCCGAATCGTACCGTAGTCTACGAGTATGTCGAAAATGGAAACCTTCATACCGCATTACTTAGCAAAAAGAGTTCGAGTATCAAACTAGAGTGGAGAGAAAGATCTGCTATTTGCGTTGGTACCGCGAAAGGTCTTGCATATCTTCATGAAGAACTTGCACAACATATTGTACATAGAGACATCAAAGCTAGTAATGTACTACTTGACAAAGATTTTAATCCCAAAATTGGTGATTTTGGTATGGCCAAATTGTTTCCAGATGATATCACTCATATCAGCACAAGAATCGCCGGAACAACTGGTTACTTAGCACCAGAATATGCACTAGGTGGACAGTTAACCAAGAAAGCTGATGTATACAGCTTTGGAGTTCTTATACTTGAAATAATTAGTGGCAAAAGCAGCTCAAGAACAAATTGGGAAGGATCACATAAATTCCTCTTAGAATGGGCATGGCAACTACATGAAGATGAGAAATGGTTGGAGCTAGTAGATCAAGAGATGGAAGAATATCCTGAGAAAGAGGTAATCAAGTACATTAAGGTTGCTCTATTCTGCACACAAGCAGCAGCAAAAAGAAGGCCATTGATGACACAGGTTGTTGATATGCTCTCTAAGGAAATTCAGCTGAATGAGAAACAACTCACAGCACCAGGATTGTTCAATTATGATGTTGGAGAATCCTCTCAAAAGAAATCAAACCCTGAATCTTTAGTTTATCACACTAGTTCTACTCAGGCTAGTATTACTCAAGTCACTCCAAGGTGA 1116 0.3737 MRCSSCFRTFSVKKEKEHPSNYISSEIEGYSLDNLKHFSDKELRLATDNYHLSNKIGRGGFGTVYKGTLKNGRKIAVKPLSVGSKQGVREFLTEITTLSNVKHSNLVELVGFCIQGPNRTVVYEYVENGNLHTALLSKKSSSIKLEWRERSAICVGTAKGLAYLHEELAQHIVHRDIKASNVLLDKDFNPKIGDFGMAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVYSFGVLILEIISGKSSSRTNWEGSHKFLLEWAWQLHEDEKWLELVDQEMEEYPEKEVIKYIKVALFCTQAAAKRRPLMTQVVDMLSKEIQLNEKQLTAPGLFNYDVGESSQKKSNPESLVYHTSSTQASITQVTPR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4712 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Psa1g4712 371 PANTHER - 4 363 - -
Psa1g4712 371 MobiDBLite consensus disorder prediction 348 371 - -
Psa1g4712 371 Gene3D Phosphorylase Kinase; domain 1 21 125 - -
Psa1g4712 371 ProSiteProfiles Protein kinase domain profile. 50 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4712 371 SUPERFAMILY Protein kinase-like (PK-like) 24 320 IPR011009 -
Psa1g4712 371 Gene3D Transferase(Phosphotransferase) domain 1 126 335 - -
Psa1g4712 371 Pfam Protein tyrosine and serine/threonine kinase 51 320 IPR001245 GO:0004672|GO:0006468
Psa1g4712 371 PIRSF TyrPK_CSF1-R 138 252 - -
Psa1g4712 371 PIRSF TyrPK_CSF1-R 39 154 - -
Psa1g4712 371 PIRSF TyrPK_CSF1-R 284 369 - -
Psa1g4712 371 CDD STKc_IRAK 56 322 - -
Psa1g4712 371 ProSitePatterns Protein kinases ATP-binding region signature. 56 78 IPR017441 GO:0005524
Psa1g4712 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 363 - -
Psa1g4712 371 SMART serkin_6 50 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4712 Psa-Chr1 356380316 356383226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4712 38 335 Receptor kinase-like Gene Family AT1G56120 53.020 3.63e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa1g4712 PK_Tyr_Ser-Thr 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4712 - - mtr:MTR_2g013210 662.529