Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4681 ATGGAGGAAAATACTAGTTCGTGGTTACGGAGGGCGAAATATTCTCACACCGTGTGTCATCGTTTCGATACATCTAGGAAGGACTCTACTCCGTTCCCCGTTCAATCGGAACGAAATTCAACTTCTTCGAAGGGTAAGAGAAATCTTTTAACCAACAAGCAGAGATCTTTGTCGCCATTGCCGAAAACTTTAGTTTCCGACGTCTTTAGAGAAGCCAAACATGAACTGAAGAGGTTCTCGACACCTGGTCCTCGGAGGGACAAGCGGATTATGGGAAAGGTGTCGAGCAAGGAATCTAGGGAACTACCCAAGGTGCCGAACTGGAAATCTCCTTTTACTAGTCCGAATAGGCAAAAGATGTCAAAGGGCCTTAGCAAGGAGTCTTCATGGAGTAATTTGTTTGAAAACAGCGGCGGCGGTGGAAAGGTTTCTGCTTTGGAAACAGCTGAGGAATGGACTATTGACATGTCGAAGCTGCTTATTGGCCATAAGTTCGCTCATGGCGCTCATAGTAGGCTCTATCATGGTGAATATAAAGAAGAGACTGTAGCTGTTAAGATCATTAGGGTACCTGATGACGACGATAATGGAGATTTGGCTTCTCGATTAGAGAATCAGTTTGTTAGAGAAGTCACCCTTTTATCTCGCCTTCATCATCGGAATGTTATAAAGTTCATAGCTGCGAGCAGCAATCCCCCGGTTTACTGTATAATCACAGAATATATATCCGAAGGCTCGTTGAGGGCTTATTTGCATAAGTTGGAGCGCAAAACTATTTCTCATGAGAAGCTTATCACTTTCGCTCTGGATATCGCTCATGGAATGCAATATATACACTCTCAAGGTGTCATTCATAGGGATCTTAAACCAGAGAATATCCTTATTGATGAAGAGTCTCGTCTTAAACTTGCTGATTTCGGCATTGCTTGTGAGGAGGCCGTATGCGACCTATTGGCTGATGATCCTGGAACATATCGTTGGATGGCACCTGAAATGATCAAACGAAAATCGTATGGGAGAAAGGTTGATGTGTACAGTTTTGGGCTTATCTTATGGGAATTGTTGACCGGAACAATTCCATACGAGGATATGAATCCAATCCAGGCTGCTTTTGCTGTCGTCAATAAGAAACTAAGGCCGATTATTCCTCCAAACTGCCCACCTGCAATGCGAGCTTTAATCGAGCAATGCTGGTCGCTGCAACCAGACAAGAGGCCTGATTTCTGGCAGATTGTCAAGGTATTAGAGCAATTTCAATCTTCCCTTGCCCGTGACGGAACCCTGACTCTGCTGCAGAACGCTCGTTGCCAAGATCAAAAGAAAGGGCTTCGTCATTGGATTCAAAAGCTTGGCCCCGTTCATCAAAATAGCCACAGCGGCCCTAAGCCTAAGCCGAAATTCACATGA 1407 0.4471 MEENTSSWLRRAKYSHTVCHRFDTSRKDSTPFPVQSERNSTSSKGKRNLLTNKQRSLSPLPKTLVSDVFREAKHELKRFSTPGPRRDKRIMGKVSSKESRELPKVPNWKSPFTSPNRQKMSKGLSKESSWSNLFENSGGGGKVSALETAEEWTIDMSKLLIGHKFAHGAHSRLYHGEYKEETVAVKIIRVPDDDDNGDLASRLENQFVREVTLLSRLHHRNVIKFIAASSNPPVYCIITEYISEGSLRAYLHKLERKTISHEKLITFALDIAHGMQYIHSQGVIHRDLKPENILIDEESRLKLADFGIACEEAVCDLLADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWELLTGTIPYEDMNPIQAAFAVVNKKLRPIIPPNCPPAMRALIEQCWSLQPDKRPDFWQIVKVLEQFQSSLARDGTLTLLQNARCQDQKKGLRHWIQKLGPVHQNSHSGPKPKPKFT* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4681 468 SMART serkin_6 159 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4681 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Psa1g4681 468 Pfam Protein tyrosine and serine/threonine kinase 161 415 IPR001245 GO:0004672|GO:0006468
Psa1g4681 468 ProSiteProfiles Protein kinase domain profile. 159 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4681 468 CDD STKc_MAP3K-like 166 415 - -
Psa1g4681 468 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 443 - -
Psa1g4681 468 PRINTS Tyrosine kinase catalytic domain signature 239 252 IPR001245 GO:0004672|GO:0006468
Psa1g4681 468 PRINTS Tyrosine kinase catalytic domain signature 277 295 IPR001245 GO:0004672|GO:0006468
Psa1g4681 468 PRINTS Tyrosine kinase catalytic domain signature 323 333 IPR001245 GO:0004672|GO:0006468
Psa1g4681 468 PRINTS Tyrosine kinase catalytic domain signature 342 364 IPR001245 GO:0004672|GO:0006468
Psa1g4681 468 PRINTS Tyrosine kinase catalytic domain signature 386 408 IPR001245 GO:0004672|GO:0006468
Psa1g4681 468 MobiDBLite consensus disorder prediction 19 57 - -
Psa1g4681 468 Gene3D Transferase(Phosphotransferase) domain 1 244 455 - -
Psa1g4681 468 MobiDBLite consensus disorder prediction 81 103 - -
Psa1g4681 468 Gene3D Phosphorylase Kinase; domain 1 147 243 - -
Psa1g4681 468 MobiDBLite consensus disorder prediction 28 57 - -
Psa1g4681 468 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 443 - -
Psa1g4681 468 SUPERFAMILY Protein kinase-like (PK-like) 145 415 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4681 Psa-Chr1 355434859 355438455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4681 1 468 MAP Kinase Kinase Kinase AT5G58950 53.962 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Psa1g4681 PK_Tyr_Ser-Thr 8.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4681 - - gmx:100500590 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g2624 7 187596837 187600428 Psa1g4681 1 355434859 355438455 PCT