Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4680 ATGGAGAACAACCCTAGTTCATCAAGACTTGACAGAAAATTCATTGAGAGAAACAGAAGAAATCAAATGAAAACTCTCTACCACAAACTCAATTCAATTCTTCCTCATCAAACCTCAAAGGCTATTTCGATGCCGGATCGGCTAGAGGAAGCAACAAATTACATAAAGACGTTGCAGATAAATTTGGAGAAAACGAAGGAAAAGAAGAAGTTTCTACTAGAAACTCAAAGGCCAAATGTGAATATGAAAAGAAGCAAGAAATTGATATTAAAATCTCCAAAAATTGAGATCCACCAAATAGGTTTAACCTTACAAGTTGTTCTAATAACTGGATTGGATTCACAGTTTTTGTTCAATGAAACCATTAGAATTCTGAATGAAGAGAGACTTGATATTGTTAATGCTAGCTATAAAGTCAATAAAGATTCTGTTTTCCATTCAATACATTGTCAGGTACAAGAAGAATTTGGCAATGGAAGTGCAAGAATATCTGAGAGATTGAACAAGTTTATGCATGATTATTAG 525 0.3333 MENNPSSSRLDRKFIERNRRNQMKTLYHKLNSILPHQTSKAISMPDRLEEATNYIKTLQINLEKTKEKKKFLLETQRPNVNMKRSKKLILKSPKIEIHQIGLTLQVVLITGLDSQFLFNETIRILNEERLDIVNASYKVNKDSVFHSIHCQVQEEFGNGSARISERLNKFMHDY* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4680 174 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 79 IPR036638 GO:0046983
Psa1g4680 174 Pfam Helix-loop-helix DNA-binding domain 12 59 IPR011598 GO:0046983
Psa1g4680 174 Coils Coil 48 75 - -
Psa1g4680 174 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 58 IPR011598 GO:0046983
Psa1g4680 174 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 172 IPR015660 GO:0003700|GO:0006357
Psa1g4680 174 PANTHER TRANSCRIPTION FACTOR BHLH162 1 172 - -
Psa1g4680 174 Gene3D - 1 90 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4680 Psa-Chr1 355407618 355408522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4680 3 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.111 1.50e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa1g4680 HLH 9.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4680 - - gmx:100784418 227.254