Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4678 ATGCTCACCTTCCAACCTTTACGAAAGAAGATATGTCTGCTTTCCTCGTCTAGTCATCTTTCTGAGGATCGACGATTCTGGGAGAGGGGCCAGAGACAATTGCCGACAAGAAGTGACTTTGAAGGAGACTTGGCTTCCTTATCACCATTGTCCAACGGTCGTTTTCGAGCTATCTCGGGTGTCGGGTTGAAGTGGGATGGCATGTTAAATTCTCTAGATTCGGCTGCATGTAATATTTTAGCCCGGCGACAGGGTTTTGCACTCATTCATCTCTTTCATCATCGTCTCTCAAACCAGTTTACACCACTGAGTACTCCACAGACTCATCATCCCTACCACCACCTTGCACCAATGGTAGGAGTTGCATTCGATGTCGGAGCCGTTCCTTTCAACCCCGACGGATGGGGCCCAATGGATTCCACCACCGCCGCCGCCGCCAACAACAACCTCCCTCTCAATGTCCCCTTCGCCCCTTTCTCCCGCTCCGACAAACTAGGTCGAATCGCGGATTGGACCCGCAACTTCAACAACCCGACCCGATCCAAAAACCCTGCTGATTCCGCCTTTGATTTCACCCTCGACGATTCCTTCCCTGGCAACGCCGACGACGACGCCACATTCCGTCTAGTCGATGGTAAACCACCACCGCGTCCCAAATTCGGCCCTAAATGGAGATACCAGCAACAACGACAACTCCCTCAGCGTCGTGATGAAGAAGTGGAAGCAAAGAAACGTGAGGCGGAGAAGGAGAGAGCTCGTCGTGACCGTCTTTACCATCAGAACCGTTCAAACCCTAACAATCCCCGGCGTGAGGCTGCAGTTTGCAAATCGTCGGTTGATATTCAGCCGGAGTGGAATATGCATGATCAGATCCCGTTTTCGACTTTCACCAAGCTATCCTACAATGTTCCTGAACCTGAAGATCTTCTACTATGTGGTGCTCTTGAGAGTTATGATCGTAGCTTTGACCGAATCAACCCGAAAAATGAGCGTCGTCTAGAGAGGTTCAAGAATCGTAACTTCTTCAAGGTTACAACCACGGATGACCCTGTTATCAGGAGGCTCGCTAATGAGGATAAAGCAACAGTTTTTGCAACTGATACTATTTTGTCGACTCTCATGTGTGCTCCCAGGTCTGTTTACTCTTGGGATATTGTTGTTCAGCGCGTTGGGAATAAGTTGTTCTTTGATAAGCGTGATGGGTCGCAGTTGGATTTGCTTTCTGTTCACGAGACCTCGCAGGAGCCTTTGCCTGAAGCTAAAGATGATATTAACTCTGCTCATTCTTTGAGTGTTGAAGCTGCTTATATCAATCAAAACTTCTCTCAGCAAGTGTTGATTAGGGATGGGAACAAGGTTACTTTTGACGAGCCTAACCCTTTTGCTAATGAGGGTGAAGAGGTTGCTTCTGTTGCTTATAGGTATAGAAGGTGGAAGCTTGATAATGATATGTATCTTGTTGCTAGGTGTGAGGTGCACAGTGTTGTTGAATTGAATAAGCAAAGGTCATTCCTTACTGTGAATGCTTTGAATGAGTTTGATCCAAAGTATTCCGGTGTTGATTGGAGACAGAAGTTGGAGACTCAAAGAGGTGCTGTTTTGGCTACTGAGCTCAAGAACAATGCTAACAAGTTGGCTAAGTGGACTGCACAAGCTCTTTTGGGTAGTGCTGATATGATGAAGTTGGGTTATGTGTCTCGGATTCATCCCCGGGACCATTTTAATCATGTTATTTTGGGTGTGGTTGGATATAAACCCAAGGACTTTGCTGCGCAAATTAATTTGAACACTACCAACATGTGGGGTATTGTGAAGTCTATTGTGGACTTGTGTATGAAGTTGAATGAGGGGAAATATGTTATTGTCAAGGATCCATCTAAGCCTCAAATTAGGATTTATGAGGTTCCCGCCGATGCATTTGAGAATGACTATGTGGAGGAGCCACTTCCCGAAGATGAACAAGTTCAGCCTACAGCAGAGGGTGCTGATGGTGGAGAGGAAGCTGCTGCTACTACAAATGACGTGGAAGATAAGGCAATTGATGTTCAAGCTTAA 2055 0.4667 MLTFQPLRKKICLLSSSSHLSEDRRFWERGQRQLPTRSDFEGDLASLSPLSNGRFRAISGVGLKWDGMLNSLDSAACNILARRQGFALIHLFHHRLSNQFTPLSTPQTHHPYHHLAPMVGVAFDVGAVPFNPDGWGPMDSTTAAAANNNLPLNVPFAPFSRSDKLGRIADWTRNFNNPTRSKNPADSAFDFTLDDSFPGNADDDATFRLVDGKPPPRPKFGPKWRYQQQRQLPQRRDEEVEAKKREAEKERARRDRLYHQNRSNPNNPRREAAVCKSSVDIQPEWNMHDQIPFSTFTKLSYNVPEPEDLLLCGALESYDRSFDRINPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAHSLSVEAAYINQNFSQQVLIRDGNKVTFDEPNPFANEGEEVASVAYRYRRWKLDNDMYLVARCEVHSVVELNKQRSFLTVNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLGSADMMKLGYVSRIHPRDHFNHVILGVVGYKPKDFAAQINLNTTNMWGIVKSIVDLCMKLNEGKYVIVKDPSKPQIRIYEVPADAFENDYVEEPLPEDEQVQPTAEGADGGEEAAATTNDVEDKAIDVQA* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4678 684 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 121 646 IPR007783 GO:0003743|GO:0005737|GO:0005852
Psa1g4678 684 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D 118 683 - -
Psa1g4678 684 MobiDBLite consensus disorder prediction 647 684 - -
Psa1g4678 684 MobiDBLite consensus disorder prediction 230 260 - -
Psa1g4678 684 MobiDBLite consensus disorder prediction 208 272 - -
Psa1g4678 684 Coils Coil 235 260 - -
Psa1g4678 684 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 125 634 IPR007783 GO:0003743|GO:0005737|GO:0005852
Psa1g4678 684 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 118 683 IPR007783 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4678 Psa-Chr1 355385047 355388806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4678 118 684 Eukaryotic Initiation Factors Gene Family AT4G20980 77.365 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4678 K03251 - gmx:100799613 1004.59