Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4676 ATGGGTGTGGACTACTACAATATTTTGAAGGTTGAAAAGAATGCCACAGATGAAGAGTTGAAGAAAGCATATAGAAAACTTGCCATGAAATGGCACCCTGATAAAAATCCCAACAATAAAAAAGAAGCCGAAACCAAATTCAAACAGATATCCGAAGCATACGAGGTTCTAAGTGATTCACAGAAGAGAGCAATTTATGATCAATATGGAGAAGAAGGACTCAAAGGCCAAGTACCACCACCTTCTCAAGAAGGTGGTGGTGGGGCTTCATTCTTCCAAACTGGAGATGGAGCAACAACGTTTAGGTTCAACCCGAGAAACGCAGACGATATATTTGCTGAGTTTTTCGGTTTTTCAAGTCCATTTGGAGGAATGAGTAATGGCGGAAGTGGCATGAGAGGTGGTTCTAGATCCTTTGGTGGAATGTTTGGTGATGATATGTTTTCTTCATTTGATGATGGTGGTAGCAGGCCTATCCACCGTCAGGGTCCACGCAAAGCAGCTAATATCGAAAATAGATTGCCTTGTAGCCTGGAAGAGCTCTATAAAGGTACCACCAAGAAGATGAAGATCTCAAGAGAAATTGCAGATGCAAGTGGGAAAACTTTGCCTGTGGAGGAAATCTTGACAATAGAAGTGAAACCAGGATGGAAAAAAGGGACAAAAATCACATATCCGGAGAAAGGAAACGAGCAACCAAATGTGATACCAGCAGATCTTGTGTTTGTGATTGATGAAAAGCCACACAATGTATTTACGAGAGATGGAAATGATTTGGTTGTGACACAGAAGATATCACTTGCAGAAGCTTTAACAGGTTACAATGTTCGTCTCACAACATTAGATGGAAGGGTTCTGAACATTCCTATAAACAATGTGATTCATCCAAACTATGAAGAGGTTGTTCCAAAGGAAGGTATGCCTGTTCCAAAAGATCCTTCAAAGAAGGGTAATCTAAGGATTAAATTCAATGTTAAGTTTCCAACAAGGTTGACATCTGAACAGAAAGCTGGGATCAAGAAACTTCTGGCACCGCAGTGA 1041 0.4073 MGVDYYNILKVEKNATDEELKKAYRKLAMKWHPDKNPNNKKEAETKFKQISEAYEVLSDSQKRAIYDQYGEEGLKGQVPPPSQEGGGGASFFQTGDGATTFRFNPRNADDIFAEFFGFSSPFGGMSNGGSGMRGGSRSFGGMFGDDMFSSFDDGGSRPIHRQGPRKAANIENRLPCSLEELYKGTTKKMKISREIADASGKTLPVEEILTIEVKPGWKKGTKITYPEKGNEQPNVIPADLVFVIDEKPHNVFTRDGNDLVVTQKISLAEALTGYNVRLTTLDGRVLNIPINNVIHPNYEEVVPKEGMPVPKDPSKKGNLRIKFNVKFPTRLTSEQKAGIKKLLAPQ* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4676 346 Pfam DnaJ domain 4 67 IPR001623 -
Psa1g4676 346 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Psa1g4676 346 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Psa1g4676 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 251 337 IPR008971 GO:0006457|GO:0051082
Psa1g4676 346 CDD DnaJ 4 59 IPR001623 -
Psa1g4676 346 Gene3D - 249 329 - -
Psa1g4676 346 Gene3D DnaJ domain 3 130 IPR036869 -
Psa1g4676 346 SMART dnaj_3 3 62 IPR001623 -
Psa1g4676 346 CDD DnaJ_C 168 331 - -
Psa1g4676 346 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 344 - -
Psa1g4676 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 255 IPR008971 GO:0006457|GO:0051082
Psa1g4676 346 Pfam DnaJ C terminal domain 170 328 IPR002939 -
Psa1g4676 346 Gene3D - 168 247 - -
Psa1g4676 346 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 344 - -
Psa1g4676 346 PRINTS DnaJ domain signature 6 24 IPR001623 -
Psa1g4676 346 PRINTS DnaJ domain signature 24 39 IPR001623 -
Psa1g4676 346 PRINTS DnaJ domain signature 42 62 IPR001623 -
Psa1g4676 346 PRINTS DnaJ domain signature 62 81 IPR001623 -
Psa1g4676 346 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4676 Psa-Chr1 355241564 355243297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4676 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 9.39e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4676 K09510 - nnu:104589095 534.258