Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4673 ATGGACTCGAATAATAACGATTCCTTAGATGTTCATGCAATGTTTCGGTACTTTTTGCATGATTATCTTATCAAAAAGGGAATGTATAGCACTGCTGCGATTTTCATGAACGAAACCACCGTTCCGCAAACTCCTACTTACCCGAAGTGTTTGGATTTAGAGCTTGATTCTCCAGATGGATTTCTGCATGAATGGTGGTCTATTTTCTATGAGACATATTTGTCTAGAGTAAAGAGGCATCAAGGGTCTGATCCACAGTCCTCTAATAAAATGGTTTCTAGATTGACCAATACTCCAATGGATGATAGTTCCACTTTTAGAATCCCCCAAATGCCAATGATTGAGCAGAGATCTCAACAGTTTCAAGCCAGCTCTAGCTTTAACAGCATCATAGCACAACAGGCTTCTCACTTGATGATACCTTCAAGACTGCAAAATAATGAGCACCTTGGCAATTTTGCTGAAAATATTGATCCAAGTGTGCTTGCTCTTTTCAGTGAAAATAACCCGGACTTCTTCTCAGGGATTAGTTCAATTCACCCATCGCAAGATGTAGGCAACCAGCTCCAGAAGCAAGTCTATAAGGATAGTGGTATTCGTATGCGTGTGGGGCCTCCCATACCTAGAAACCCTCTGGATGCAAGACAAAAAGCAATGCTGCCTTTAGATGGAGCTCAAGTAACAAACAACTATGAAGCTCCTAATTTTGTGCCAACAAATGGATTGCAATTAAATAACCAGATGCTAACTTCACTTTCGCAAATACCAAACTGTGGACAGCATCCTCAAGTGTTGAACAGACAAAATCAGGACGCAGTCCTAAGTCAAGAACTTACAAGTACTTCTAATGGTCAGATTTTCACAGCTCCTAGAATCTCTACCAGATGTAACGGTCAAGTAACAAACTATGAAGCTCCTAATTTTGTGCCAACAAATGGACTGCGATTAAATAACCAGATGCTAACTTCACTTTCGCAAATTCCAAACTATGGACAGCAGCCTCATGTGTTGAACAGACAGAATCAGGACGCAGTCCTTGGTCAAGAACTTATTACAAGTACTTCTAATAATCAGACTTTCACAGCTCCTAGAATCTCTACCAGATGTAACGGTCAACTAACAAACAACTATGATGCTCCTAATTTTGTGCCAACAAATGGATTGCCCTTAAAGAACCAGATGCTAACTTCACTTTCGCAAATGCCAAACTATGGACAGCAGCCTCATGTGTTGAACAGAGAAAATCAGGACGCGATCCTTGATCAAGGACAAGAACCTACAAGTACTTCTAATAGTCAGACTTTCACAACTCCTAGAGTCTCTACCAGATGTAATGGTCAATATCCAGAGATTCCCAAGAATGAAACAAGCAATAAGGATAGAGAGATACTGGACCAAGTTATAGTTGGAGAACCTCAATGTCAGCCGGATCTTCAAATGCAGATGCAGTCCCAAAATCTTGATATACTGGACCAAATTATAGTTGGAGAACCTCAATGTAAGCCGGATCTTCAAATGCAGATGCAATCCCAAAATCTTGATAACCGCGCAAAGAGAAAGATAACAGACCGCTTGGGACCTGAAGAACCTGTCCTGGACTGTGTGGATGTAGCAGATGAAAAACCAGAAGATGAAAATGTGGATTCTTACCTGTCTATTGAAGATGGAAATTCTGATCATCGAACTATGCCTTTTAAAAATCTGAAACGAATTTCAGGAACAAACAGTAGAAATGAAAATAAAGATTTTTCACTCCAAGAAATTGGATGCCTTCACTCGAGCAAAAGCAAGGTTTTGGCCAGCCATTTTTCATCAAATGGAAAAATTCTGGCAAGTGCTGGGCATGACAAGAAGGTTTTTATTTGGAAGATGGACACCTTTAATAATTATGCTACTGAAGAAACACATTCACTTCTCATCACAGATGTTCGGTTTAGGCCAGGTTCAACTATATTTGCAACATCTTCCTTTGATAAATCTGTAAGAGTATGGGATGCAGACAGACCAAAAAAATCGTTGTTCAGCCTTTCTGGACATTCTGAACAAGTAATGTCACTGGACTTCCACCCAAGTAAGGTGGACCTTCTTTGCTCGTGTGATAGCAATGATATAATCCGTATGTGGAATGTGAACCAGCGTTCTATCTTACATATAACTAAGGGAGGTAGTAAACAAGTTAGATTTCAGCCTGTTCATGGGAAGTTTATAGCTACTGCTACTGGAAATATTCCCAAACTAATTGATGTTCAGACCGCTAAAGTTGTGTGCAATCTAAAGGCACATGATAAAGATGTAGCTTCCATTTGTTGGGATAGAAGTGGAAAGTTTCTTGCTTCTGTCAGTGAAGACTGTGCACGAGTTTGGTCAGATGGAAAATGCATCAGTGAGTTGCTTTCAAACGGGAACAAGTTTCAATCGTGCGTATTTCATCCAACATATTCTAACCTCTTAGTTATTGGTGGCTATCAGAACCTTGAATTCTGGAGTCCAATTGAGAGCAGTAGAACAATGTCAGTAATGGCACACAAAGGGTTGATTGCTGGACTGGCAGATTCACCCGAAGATGAATTGATTGCCTCGGCTAGCCATGATTGCTTGGTGAAAATATGGAGATAA 2616 0.4021 MDSNNNDSLDVHAMFRYFLHDYLIKKGMYSTAAIFMNETTVPQTPTYPKCLDLELDSPDGFLHEWWSIFYETYLSRVKRHQGSDPQSSNKMVSRLTNTPMDDSSTFRIPQMPMIEQRSQQFQASSSFNSIIAQQASHLMIPSRLQNNEHLGNFAENIDPSVLALFSENNPDFFSGISSIHPSQDVGNQLQKQVYKDSGIRMRVGPPIPRNPLDARQKAMLPLDGAQVTNNYEAPNFVPTNGLQLNNQMLTSLSQIPNCGQHPQVLNRQNQDAVLSQELTSTSNGQIFTAPRISTRCNGQVTNYEAPNFVPTNGLRLNNQMLTSLSQIPNYGQQPHVLNRQNQDAVLGQELITSTSNNQTFTAPRISTRCNGQLTNNYDAPNFVPTNGLPLKNQMLTSLSQMPNYGQQPHVLNRENQDAILDQGQEPTSTSNSQTFTTPRVSTRCNGQYPEIPKNETSNKDREILDQVIVGEPQCQPDLQMQMQSQNLDILDQIIVGEPQCKPDLQMQMQSQNLDNRAKRKITDRLGPEEPVLDCVDVADEKPEDENVDSYLSIEDGNSDHRTMPFKNLKRISGTNSRNENKDFSLQEIGCLHSSKSKVLASHFSSNGKILASAGHDKKVFIWKMDTFNNYATEETHSLLITDVRFRPGSTIFATSSFDKSVRVWDADRPKKSLFSLSGHSEQVMSLDFHPSKVDLLCSCDSNDIIRMWNVNQRSILHITKGGSKQVRFQPVHGKFIATATGNIPKLIDVQTAKVVCNLKAHDKDVASICWDRSGKFLASVSEDCARVWSDGKCISELLSNGNKFQSCVFHPTYSNLLVIGGYQNLEFWSPIESSRTMSVMAHKGLIAGLADSPEDELIASASHDCLVKIWR* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4673 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 633 665 IPR001680 GO:0005515
Psa1g4673 871 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 13 871 IPR044716 GO:0003714
Psa1g4673 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 676 711 - -
Psa1g4673 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 632 IPR001680 GO:0005515
Psa1g4673 871 ProSiteProfiles LIS1 homology (LisH) motif profile. 20 43 IPR006594 GO:0005515
Psa1g4673 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 676 718 IPR001680 GO:0005515
Psa1g4673 871 SMART WD40_4 626 665 IPR001680 GO:0005515
Psa1g4673 871 SMART WD40_4 790 829 IPR001680 GO:0005515
Psa1g4673 871 SMART WD40_4 751 789 IPR001680 GO:0005515
Psa1g4673 871 SMART WD40_4 584 623 IPR001680 GO:0005515
Psa1g4673 871 SMART WD40_4 832 871 IPR001680 GO:0005515
Psa1g4673 871 SMART WD40_4 669 709 IPR001680 GO:0005515
Psa1g4673 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 839 871 - -
Psa1g4673 871 Gene3D - 570 722 IPR015943 GO:0005515
Psa1g4673 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 633 665 - -
Psa1g4673 871 SUPERFAMILY WD40 repeat-like 584 870 IPR036322 GO:0005515
Psa1g4673 871 CDD WD40 587 871 - -
Psa1g4673 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 591 626 - -
Psa1g4673 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 839 871 IPR001680 GO:0005515
Psa1g4673 871 Gene3D - 723 871 IPR015943 GO:0005515
Psa1g4673 871 ProSitePatterns Trp-Asp (WD) repeats signature. 696 710 IPR019775 -
Psa1g4673 871 Pfam WD domain, G-beta repeat 592 623 IPR001680 GO:0005515
Psa1g4673 871 Pfam WD domain, G-beta repeat 841 870 IPR001680 GO:0005515
Psa1g4673 871 Pfam WD domain, G-beta repeat 635 665 IPR001680 GO:0005515
Psa1g4673 871 Pfam WD domain, G-beta repeat 755 788 IPR001680 GO:0005515
Psa1g4673 871 Pfam WD domain, G-beta repeat 672 709 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4673 Psa-Chr1 354960302 354967694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4673 578 870 Miscellaneous Gene Families AT5G08390 22.549 1.29e-15 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Psa1g4673 WD40 0.027 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4673 - - gsj:114387334 575.859